SRR2934968.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934968.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	368606
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11492	3.1176920614422987	No Hit
CCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC	3305	0.8966213246664461	No Hit
GCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC	2812	0.7628741800187734	No Hit
CTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGCT	1696	0.4601118809786059	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC	982	0.26640911976473525	No Hit
CGCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTG	862	0.23385403384643763	No Hit
ACTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC	706	0.1915324221526508	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCC	699	0.18963337547408343	No Hit
GCCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTG	508	0.13781653038745978	No Hit
ACCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTG	440	0.11936864836709114	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	412	0.11177246165282172	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTC	408	0.1106872921222118	No Hit
GGCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTG	401	0.10878824544364443	No Hit
AAGTATGGGGTTTCTGTGGTTGAATTACAACAATGATTTTTCATGTCATTG	373	0.101192058729375	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCGA	20	7.0270436E-4	45.000004	41
TGTCATG	20	7.0270436E-4	45.000004	23
CTAGATG	20	7.0270436E-4	45.000004	1
CAGGTAA	20	7.0270436E-4	45.000004	6
AACGTAG	20	7.0270436E-4	45.000004	1
TCGTTTG	55	1.8189894E-12	45.000004	12
TCGCAGT	20	7.0270436E-4	45.000004	41
TCCGCTG	20	7.0270436E-4	45.000004	43
GCGACGG	20	7.0270436E-4	45.000004	2
GTCGATG	20	7.0270436E-4	45.000004	1
CTGTACT	20	7.0270436E-4	45.000004	13
TACTTAT	20	7.0270436E-4	45.000004	13
CTCCGGA	20	7.0270436E-4	45.000004	24
TACCAGG	20	7.0270436E-4	45.000004	2
TCTCTAT	20	7.0270436E-4	45.000004	35
TCCGATT	20	7.0270436E-4	45.000004	24
GAGTCAA	65	0.0	45.000004	20
CGTGAGT	20	7.0270436E-4	45.000004	32
CGGTTAG	20	7.0270436E-4	45.000004	1
GTCTCTA	20	7.0270436E-4	45.000004	34