SRR2934966.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934966.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1137440
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	44732	3.9326909551273035	No Hit
CCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGC	3618	0.3180827120551414	TruSeq Adapter, Index 15 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGC	3498	0.30753270502180335	TruSeq Adapter, Index 15 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGCT	2143	0.18840554227036152	TruSeq Adapter, Index 14 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGC	1388	0.12202841468560979	TruSeq Adapter, Index 15 (95% over 22bp)
CGCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTG	1267	0.11139049092699395	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	1146	0.1007525671683781	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTCGA	30	2.1654814E-6	45.000004	29
TATAGCG	60	0.0	45.000004	1
CAACGCG	20	7.033257E-4	45.0	23
TCCGATA	20	7.033257E-4	45.0	15
ACGTTAC	20	7.033257E-4	45.0	12
ATTCGTT	20	7.033257E-4	45.0	24
ATCCGTG	20	7.033257E-4	45.0	25
ACGATCG	20	7.033257E-4	45.0	23
ACGATAG	25	3.8907812E-5	45.0	1
TGCGATA	20	7.033257E-4	45.0	1
GAACGTA	20	7.033257E-4	45.0	9
CTACCGA	25	3.8907812E-5	45.0	44
CGCACTA	20	7.033257E-4	45.0	15
TATACGA	20	7.033257E-4	45.0	20
GCGTAAG	25	3.8907812E-5	45.0	1
ACGGTAG	25	3.8907812E-5	45.0	1
CGTTTTT	30385	0.0	44.474247	1
CGTTAGG	130	0.0	41.53846	2
CGTTGAT	55	6.184564E-11	40.909092	25
TAACGAA	55	6.184564E-11	40.909092	30