##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934966.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1137440 Sequences flagged as poor quality 0 Sequence length 51 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.56917287944859 34.0 31.0 34.0 31.0 34.0 2 32.72980113236742 34.0 31.0 34.0 31.0 34.0 3 32.773957307638206 34.0 31.0 34.0 31.0 34.0 4 36.18558253622169 37.0 37.0 37.0 35.0 37.0 5 36.07480482486989 37.0 35.0 37.0 35.0 37.0 6 36.064497467998315 37.0 35.0 37.0 35.0 37.0 7 36.23506910254607 37.0 37.0 37.0 35.0 37.0 8 36.2318197003798 37.0 37.0 37.0 35.0 37.0 9 38.0221216064144 39.0 39.0 39.0 35.0 39.0 10 37.55307268954846 39.0 37.0 39.0 35.0 39.0 11 37.43787276691518 39.0 37.0 39.0 34.0 39.0 12 37.38830971303981 39.0 37.0 39.0 35.0 39.0 13 37.34949535799691 39.0 37.0 39.0 34.0 39.0 14 38.63376441834295 40.0 38.0 41.0 34.0 41.0 15 38.681562104374734 40.0 38.0 41.0 35.0 41.0 16 38.779154065269374 40.0 38.0 41.0 35.0 41.0 17 38.80509829089886 40.0 38.0 41.0 35.0 41.0 18 38.31561049374033 39.0 38.0 41.0 35.0 41.0 19 37.83863412575609 38.0 37.0 41.0 35.0 41.0 20 37.29990241243494 38.0 35.0 41.0 34.0 41.0 21 37.24677609368406 38.0 35.0 41.0 34.0 41.0 22 37.05425780700521 38.0 35.0 40.0 34.0 41.0 23 36.930590624560416 38.0 35.0 40.0 33.0 41.0 24 36.73934537206358 37.0 35.0 40.0 33.0 41.0 25 36.59581955971304 37.0 35.0 40.0 33.0 41.0 26 36.718251512167676 37.0 35.0 40.0 33.0 41.0 27 36.745896926431286 38.0 35.0 40.0 33.0 41.0 28 36.666865944577296 38.0 35.0 40.0 33.0 41.0 29 36.52431688704459 38.0 35.0 40.0 33.0 41.0 30 36.20453826135884 38.0 35.0 40.0 32.0 41.0 31 35.6521522014348 38.0 35.0 40.0 30.0 41.0 32 34.92154487269658 38.0 35.0 40.0 23.0 41.0 33 34.033880468420314 38.0 34.0 40.0 17.0 41.0 34 33.29793571529048 38.0 33.0 40.0 12.0 41.0 35 32.8220398438599 37.0 33.0 40.0 10.0 41.0 36 32.59805704037136 37.0 32.0 40.0 10.0 41.0 37 32.35206076804051 37.0 31.0 40.0 8.0 41.0 38 32.19030893937263 37.0 31.0 40.0 8.0 41.0 39 32.15301642284428 37.0 31.0 40.0 8.0 41.0 40 32.02173213532142 37.0 31.0 40.0 8.0 41.0 41 31.861897770431845 37.0 30.0 40.0 8.0 41.0 42 31.73197443381629 37.0 29.0 40.0 7.0 41.0 43 31.62498153748769 36.0 29.0 40.0 7.0 41.0 44 31.507109825573217 36.0 29.0 40.0 7.0 41.0 45 31.4817247503165 36.0 28.0 40.0 7.0 41.0 46 31.40842769728513 36.0 28.0 40.0 7.0 41.0 47 31.37589850893234 35.0 28.0 40.0 7.0 41.0 48 31.302592664228442 35.0 28.0 40.0 7.0 41.0 49 31.17729726403151 35.0 27.0 40.0 7.0 41.0 50 31.070563722042483 35.0 27.0 40.0 7.0 41.0 51 30.435842769728513 35.0 25.0 39.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 5.0 10 11.0 11 7.0 12 13.0 13 22.0 14 27.0 15 47.0 16 98.0 17 207.0 18 363.0 19 731.0 20 1240.0 21 2088.0 22 3233.0 23 5811.0 24 11538.0 25 24696.0 26 44307.0 27 56772.0 28 52297.0 29 41109.0 30 32323.0 31 28439.0 32 28192.0 33 35395.0 34 63141.0 35 81546.0 36 82065.0 37 108316.0 38 192539.0 39 240686.0 40 174.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.861320157546775 15.125457166971445 17.678207202138136 36.33501547334365 2 51.99131382754255 17.247239414826275 17.38729075819384 13.374155999437331 3 23.902095934730625 17.728583485722325 45.712477141651426 12.656843437895626 4 21.69099029399353 18.70287663525109 44.81678154452103 14.789351526234352 5 19.140789843859896 21.865504993669997 43.76485792657195 15.228847235898158 6 20.141282177521454 25.30542270361514 42.95066113377409 11.602633985089323 7 60.090378393585596 4.204617386411591 31.87069208046139 3.8343121395414266 8 59.946898297932194 4.1934519623013085 31.667428611619076 4.192221128147419 9 55.663771275847516 5.67370586580391 33.52730693487129 5.135215923477282 10 30.403010268673512 19.098150232100156 39.64551976367984 10.85331973554649 11 23.648456182304123 18.806354620903083 43.276744267829514 14.268444928963287 12 22.230886903924603 16.717013644675763 46.7164861443241 14.335613307075537 13 18.11383457588972 19.63356308904206 47.105078070052045 15.147524265016177 14 14.640068926712619 21.802380784920523 46.77925868617246 16.7782916021944 15 13.667622028414685 20.162821775214518 51.33835630890421 14.831199887466592 16 16.267143761429175 18.92064636376424 48.96970389646926 15.842505978337318 17 16.39163384442256 18.878710085806723 46.2975629483753 18.432093121395415 18 16.359016739344494 19.49140174426783 47.813071458714305 16.336510057673372 19 17.246975664650442 20.593789562526375 45.5603812069208 16.598853565902377 20 19.494478829652554 19.79102194401463 46.07249613166409 14.642003094668729 21 18.090448726965818 19.907159938106624 46.310398790265864 15.691992544661696 22 16.297387114924746 19.72649106766071 45.55897453931636 18.417147278098188 23 16.103091152060767 20.284410606273738 46.402095934730625 17.21040230693487 24 16.86198832465888 18.955725137150093 47.413929525953016 16.76835701223801 25 16.491419327612885 20.13679842453228 44.9750316500211 18.396750597833734 26 16.24947249964833 21.40860177240118 45.43844070896047 16.903485018990015 27 16.988764242509493 20.726719651146432 46.01033900689267 16.2741770994514 28 14.56516387677592 21.36200590800394 46.75086158390772 17.32196863131242 29 16.280858770572515 19.965624560416373 46.48192432128288 17.27159234772823 30 17.554068786045857 21.013767759178506 45.03033127022085 16.40183218455479 31 18.202542551695032 22.62158883105922 42.478548319032214 16.697320298213533 32 18.525284850189898 22.113957659305107 42.18508229005486 17.175675200450133 33 19.184572373048248 23.956164720776478 39.47100506400338 17.388257842171896 34 18.324131382754256 23.91115135743424 38.86200590800394 18.902711351807568 35 19.487972991981994 23.862885075256717 37.46597622731748 19.183165705443802 36 20.882596005064002 26.346268814179208 35.15271135180757 17.61842382894922 37 19.99155999437333 27.04089886059924 36.133862005908 16.833679139119425 38 18.010796173864115 27.61200590800394 35.488465325643546 18.888732592488395 39 20.129149669433115 25.917850611900406 35.49321282880855 18.459786889857927 40 20.55132578421719 25.26023350682234 36.030032353354905 18.15840835560557 41 18.995111830074553 25.686629624419748 35.00545083696722 20.31280770853847 42 20.30296103530736 25.5267091011394 34.35996623997749 19.81036362357575 43 20.328017302011535 25.462881558587707 34.84403572935715 19.365065410043606 44 18.445280630187085 26.686770291180196 34.44427837951892 20.4236706991138 45 18.97911098607399 25.440902377268255 34.30466661977775 21.275320016880013 46 19.243388662259107 25.869056829371218 36.05438528625686 18.833169222112815 47 18.5993986495991 24.982064988043327 37.809027289351526 18.60950907300605 48 18.449500633000422 23.36949641299761 37.97167323111549 20.209329722886483 49 18.457413138275424 23.04121536081024 38.571880714587145 19.929490786327193 50 17.849381066254043 23.562473624982417 37.863535659023775 20.72460964973977 51 17.472306231537488 22.8519306512871 36.6689231959488 23.006839921226614 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 334.0 1 708.0 2 1082.0 3 45121.5 4 89161.0 5 61399.0 6 33637.0 7 31867.5 8 30098.0 9 29023.5 10 27949.0 11 26896.5 12 25844.0 13 24348.0 14 22852.0 15 20782.0 16 18712.0 17 16845.0 18 14978.0 19 13839.5 20 12701.0 21 12167.5 22 11634.0 23 10733.5 24 9833.0 25 10303.5 26 11058.0 27 11342.0 28 11773.5 29 12205.0 30 13474.0 31 14743.0 32 16654.0 33 18565.0 34 20237.5 35 21910.0 36 23691.0 37 25472.0 38 27374.0 39 29276.0 40 33674.0 41 38072.0 42 43942.5 43 49813.0 44 54263.0 45 58713.0 46 66649.0 47 74585.0 48 81637.0 49 88689.0 50 88183.5 51 87678.0 52 74776.0 53 61874.0 54 54238.0 55 46602.0 56 42681.0 57 38760.0 58 36802.5 59 34845.0 60 33656.0 61 32467.0 62 30473.0 63 28479.0 64 23772.5 65 19066.0 66 15537.5 67 12009.0 68 10351.5 69 8694.0 70 7159.0 71 5624.0 72 4523.5 73 3423.0 74 2783.0 75 1761.5 76 1380.0 77 1111.0 78 842.0 79 572.0 80 302.0 81 223.5 82 145.0 83 105.0 84 65.0 85 40.0 86 15.0 87 29.5 88 44.0 89 24.5 90 5.0 91 3.5 92 2.0 93 1.5 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1137440.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.15810906655502 #Duplication Level Percentage of deduplicated Percentage of total 1 75.76628158950915 24.36500346922755 2 10.406420359343386 6.693016018163665 3 4.211661203245798 4.063171809760703 4 2.1567092216294776 2.774227614960229 5 1.2249610821059214 1.969621604032374 6 0.7984871724606041 1.5406702548139943 7 0.5604886977083453 1.261697967003345 8 0.4148087301490901 1.0671571508714903 9 0.2988881801927457 0.865051082760822 >10 3.1830847127022923 25.85526173210343 >50 0.8789667959783476 18.42177612270542 >100 0.09283053625490464 4.932483134200327 >500 0.004181555686924683 0.914671224014078 >1k 0.0019513926538981855 1.2660885716701777 >5k 0.0 0.0 >10k+ 2.787703791283122E-4 4.010102243712412 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 44732 3.9326909551273035 No Hit CCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGC 3618 0.3180827120551414 TruSeq Adapter, Index 15 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGC 3498 0.30753270502180335 TruSeq Adapter, Index 15 (95% over 22bp) CTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGCT 2143 0.18840554227036152 TruSeq Adapter, Index 14 (95% over 22bp) TCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGC 1388 0.12202841468560979 TruSeq Adapter, Index 15 (95% over 22bp) CGCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTG 1267 0.11139049092699395 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 1146 0.1007525671683781 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.6375017583345054E-4 0.0 0.0 0.1997467998311999 0.0 2 2.6375017583345054E-4 0.0 0.0 1.0892882261921508 0.0 3 2.6375017583345054E-4 0.0 0.0 1.5381910254606836 0.0 4 2.6375017583345054E-4 0.0 0.0 1.9793571529047687 0.0 5 2.6375017583345054E-4 0.0 0.0 3.1074166549444366 0.0 6 2.6375017583345054E-4 0.0 0.0 3.6700836967224646 0.0 7 2.6375017583345054E-4 0.0 0.0 4.243916162610775 0.0 8 2.6375017583345054E-4 0.0 0.0 5.116137994091996 0.0 9 2.6375017583345054E-4 0.0 0.0 5.4265719510479675 0.0 10 2.6375017583345054E-4 0.0 0.0 6.219844563229709 0.0 11 2.6375017583345054E-4 0.0 0.0 7.481361654241103 0.0 12 2.6375017583345054E-4 0.0 0.0 8.40888310592207 0.0 13 2.6375017583345054E-4 0.0 0.0 8.773473765649177 0.0 14 2.6375017583345054E-4 0.0 0.0 8.923283865522578 0.0 15 2.6375017583345054E-4 0.0 0.0 9.25138908425939 0.0 16 2.6375017583345054E-4 0.0 0.0 9.920787030524687 0.0 17 2.6375017583345054E-4 0.0 0.0 10.747467998311999 0.0 18 2.6375017583345054E-4 0.0 0.0 11.655999437332959 0.0 19 2.6375017583345054E-4 0.0 0.0 12.18710437473625 0.0 20 2.6375017583345054E-4 0.0 0.0 12.720231396820932 0.0 21 2.6375017583345054E-4 0.0 0.0 13.380222253481502 0.0 22 3.516669011112674E-4 0.0 0.0 14.078808552539035 0.0 23 3.516669011112674E-4 0.0 0.0 14.740469826979885 0.0 24 4.395836263890843E-4 0.0 0.0 15.283443522295682 0.0 25 4.395836263890843E-4 0.0 0.0 15.774722183148121 0.0 26 4.395836263890843E-4 0.0 0.0 16.232240821493882 0.0 27 5.275003516669011E-4 0.0 0.0 16.654856519904346 0.0 28 6.15417076944718E-4 0.0 0.0 17.124859333239556 0.0 29 6.15417076944718E-4 0.0 0.0 17.592400478266985 0.0 30 6.15417076944718E-4 0.0 0.0 18.109087072724716 0.0 31 6.15417076944718E-4 0.0 0.0 18.61038824025883 0.0 32 6.15417076944718E-4 0.0 0.0 19.07942396961598 0.0 33 6.15417076944718E-4 0.0 0.0 19.540810943873964 0.0 34 6.15417076944718E-4 0.0 0.0 19.989713743142495 0.0 35 6.15417076944718E-4 0.0 0.0 20.47562948375299 0.0 36 6.15417076944718E-4 0.0 0.0 20.94598396398931 0.0 37 6.15417076944718E-4 0.0 0.0 21.398930932620623 0.0 38 7.033338022225348E-4 0.0 0.0 21.844141229427485 0.0 39 7.912505275003516E-4 0.0 0.0 22.293571529047686 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGTCGA 30 2.1654814E-6 45.000004 29 TATAGCG 60 0.0 45.000004 1 CAACGCG 20 7.033257E-4 45.0 23 TCCGATA 20 7.033257E-4 45.0 15 ACGTTAC 20 7.033257E-4 45.0 12 ATTCGTT 20 7.033257E-4 45.0 24 ATCCGTG 20 7.033257E-4 45.0 25 ACGATCG 20 7.033257E-4 45.0 23 ACGATAG 25 3.8907812E-5 45.0 1 TGCGATA 20 7.033257E-4 45.0 1 GAACGTA 20 7.033257E-4 45.0 9 CTACCGA 25 3.8907812E-5 45.0 44 CGCACTA 20 7.033257E-4 45.0 15 TATACGA 20 7.033257E-4 45.0 20 GCGTAAG 25 3.8907812E-5 45.0 1 ACGGTAG 25 3.8907812E-5 45.0 1 CGTTTTT 30385 0.0 44.474247 1 CGTTAGG 130 0.0 41.53846 2 CGTTGAT 55 6.184564E-11 40.909092 25 TAACGAA 55 6.184564E-11 40.909092 30 >>END_MODULE