SRR2934965.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934965.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1256247
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	38609	3.0733605731993787	No Hit
GCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC	8515	0.6778125639305009	No Hit
CCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC	6566	0.5226679148288513	No Hit
CTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGCT	4290	0.341493352819947	No Hit
TCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC	3277	0.2608563443335586	No Hit
ACTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC	2199	0.17504519413777705	No Hit
CGCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTG	2079	0.16549293252043587	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGC	1573	0.1252142293673139	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTC	1559	0.12409979884529078	No Hit
GCCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTG	1506	0.11988088329763175	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCC	1472	0.11717440917271842	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCG	1420	0.11303509580520392	No Hit
ACCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTG	1358	0.10809976063624431	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGACG	25	3.891014E-5	45.0	1
AGTCCGT	20	7.0335384E-4	45.0	13
GTCGATA	20	7.0335384E-4	45.0	18
GTCGACG	20	7.0335384E-4	45.0	1
ACTTCGC	25	3.891014E-5	45.0	38
CGTCTAA	25	3.891014E-5	45.0	29
CATTACG	20	7.0335384E-4	45.0	24
TACGAAG	20	7.0335384E-4	45.0	1
GTCGTTG	20	7.0335384E-4	45.0	29
GTCCGTT	20	7.0335384E-4	45.0	14
CGAATTA	20	7.0335384E-4	45.0	16
AATTCGT	35	1.2120472E-7	45.0	31
CGTCGAA	20	7.0335384E-4	45.0	31
CGCGTTA	20	7.0335384E-4	45.0	35
CGGTAAG	25	3.891014E-5	45.0	15
TACAGCG	55	1.8189894E-12	45.0	1
TATACGA	25	3.891014E-5	45.0	41
TACGTAG	40	6.8157533E-9	45.0	1
ATTTCGT	20	7.0335384E-4	45.0	12
AGGTCCG	25	3.891014E-5	45.0	12