SRR2934964.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934964.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1005244
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	38469	3.826832092506894	No Hit
GCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGC	4074	0.40527473926728236	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGC	3621	0.3602110532368261	Illumina Single End Adapter 2 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGCT	2532	0.2518791457596365	Illumina Single End Adapter 2 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGC	1696	0.16871525719128888	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCC	1248	0.12414896283887294	No Hit
ACTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGC	1077	0.10713816744989275	Illumina Single End Adapter 2 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTG	1076	0.1070386891142847	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCGCG	45	3.8380676E-10	45.000004	1
CTATGCG	25	3.8904553E-5	45.0	1
TAACGCG	40	6.8139343E-9	45.0	1
ATCGTTA	20	7.032865E-4	45.0	28
CCCCGTA	20	7.032865E-4	45.0	32
CCGTAGG	25	3.8904553E-5	45.0	2
CGTAGCA	20	7.032865E-4	45.0	24
ACAATCG	20	7.032865E-4	45.0	12
CGGGCCG	25	3.8904553E-5	45.0	6
TATTACG	35	1.2117198E-7	45.0	1
TATAGCG	20	7.032865E-4	45.0	1
CGTCGAC	20	7.032865E-4	45.0	26
CCGCGTG	20	7.032865E-4	45.0	39
ACCGTAG	20	7.032865E-4	45.0	22
GACGCGA	20	7.032865E-4	45.0	14
ATCGGCA	20	7.032865E-4	45.0	27
CAATCGT	20	7.032865E-4	45.0	13
ATACCGG	40	6.8139343E-9	45.0	2
GCGTACG	70	0.0	45.0	1
CACCCGC	25	3.8904553E-5	45.0	28