SRR2934960.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934960.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	979761
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	28282	2.8866223497363133	No Hit
CCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGC	5505	0.5618717217770457	No Hit
GCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGC	5469	0.5581973562940349	No Hit
CTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGCT	3535	0.3608022772900738	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGC	2278	0.23250568250828518	No Hit
CGCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTG	1967	0.2007632473633876	No Hit
ACTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGC	1587	0.16197827837605294	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCC	1385	0.14136100538804872	No Hit
GCCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTG	1059	0.10808758462523002	No Hit
AGCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTG	1003	0.10237190498499124	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGATCG	20	7.0327753E-4	45.000004	1
AGCCGAC	20	7.0327753E-4	45.000004	19
TCGTTCC	20	7.0327753E-4	45.000004	16
AAATCGA	35	1.2116834E-7	45.000004	28
TTCAGCG	45	3.8380676E-10	45.000004	1
CTCCGCG	20	7.0327753E-4	45.000004	1
GCGCGAT	20	7.0327753E-4	45.000004	1
CGGCCAA	20	7.0327753E-4	45.000004	30
ATTACGA	20	7.0327753E-4	45.000004	18
GCTATCG	40	6.8139343E-9	45.000004	2
GGTCCGT	20	7.0327753E-4	45.000004	8
CGACCCG	20	7.0327753E-4	45.000004	32
CATTCGG	20	7.0327753E-4	45.000004	21
ATCACGC	20	7.0327753E-4	45.000004	13
ACCCTCG	20	7.0327753E-4	45.000004	15
CATTACG	20	7.0327753E-4	45.000004	17
ATCCGCC	20	7.0327753E-4	45.000004	13
CTAACGG	40	6.8139343E-9	45.000004	2
GCCGAGT	20	7.0327753E-4	45.000004	13
CCGTAAC	20	7.0327753E-4	45.000004	11