##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934959.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 894722 Sequences flagged as poor quality 0 Sequence length 51 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.510826826656775 34.0 31.0 34.0 31.0 34.0 2 32.676800168096904 34.0 31.0 34.0 31.0 34.0 3 32.73931679337269 34.0 31.0 34.0 31.0 34.0 4 36.14925977007383 37.0 37.0 37.0 35.0 37.0 5 36.03284819195236 37.0 35.0 37.0 35.0 37.0 6 36.02964160934905 37.0 35.0 37.0 35.0 37.0 7 36.20044438384213 37.0 37.0 37.0 35.0 37.0 8 36.2065010137227 37.0 37.0 37.0 35.0 37.0 9 37.96891548436274 39.0 39.0 39.0 35.0 39.0 10 37.558756798201 39.0 37.0 39.0 35.0 39.0 11 37.42013385163213 39.0 37.0 39.0 34.0 39.0 12 37.28695281886441 39.0 37.0 39.0 34.0 39.0 13 37.19686450092878 39.0 37.0 39.0 34.0 39.0 14 38.42046132765261 40.0 38.0 41.0 34.0 41.0 15 38.44812131589477 40.0 38.0 41.0 34.0 41.0 16 38.550298304948356 40.0 38.0 41.0 34.0 41.0 17 38.563503523999636 40.0 38.0 41.0 34.0 41.0 18 38.04307594984811 39.0 37.0 40.0 34.0 41.0 19 37.60861362523778 38.0 37.0 40.0 34.0 41.0 20 37.09340778476443 38.0 35.0 40.0 34.0 41.0 21 37.05067719358639 38.0 35.0 40.0 34.0 41.0 22 36.84933532426832 38.0 35.0 40.0 33.0 41.0 23 36.736931694984584 37.0 35.0 40.0 33.0 41.0 24 36.557749781496376 37.0 35.0 40.0 33.0 41.0 25 36.44552833170527 37.0 35.0 40.0 33.0 41.0 26 36.57837741779011 37.0 35.0 40.0 33.0 41.0 27 36.6313357668639 37.0 35.0 40.0 33.0 41.0 28 36.580347862241005 37.0 35.0 40.0 33.0 41.0 29 36.48195193590858 37.0 35.0 40.0 33.0 41.0 30 36.17178520255454 37.0 35.0 40.0 32.0 41.0 31 35.6424397745892 37.0 35.0 40.0 30.0 41.0 32 34.948705855003006 37.0 35.0 40.0 23.0 41.0 33 34.08729974226631 37.0 34.0 40.0 18.0 41.0 34 33.388467032217825 37.0 33.0 40.0 14.0 41.0 35 32.93587952458976 37.0 33.0 40.0 10.0 41.0 36 32.75829922590481 37.0 33.0 40.0 10.0 41.0 37 32.56145260762561 37.0 32.0 40.0 10.0 41.0 38 32.457656121119186 37.0 32.0 40.0 10.0 41.0 39 32.44907356698505 37.0 32.0 40.0 10.0 41.0 40 32.33641846294156 37.0 31.0 40.0 9.0 41.0 41 32.22123072865091 37.0 31.0 40.0 8.0 41.0 42 32.11359841380898 37.0 31.0 40.0 8.0 41.0 43 32.02037727919957 36.0 31.0 40.0 8.0 41.0 44 31.908592836657643 36.0 30.0 40.0 8.0 41.0 45 31.858623125395376 36.0 30.0 40.0 8.0 41.0 46 31.78044353441628 36.0 30.0 40.0 8.0 41.0 47 31.732854450879714 36.0 30.0 40.0 8.0 41.0 48 31.680781292960273 35.0 30.0 40.0 8.0 41.0 49 31.56067024170636 35.0 29.0 40.0 8.0 41.0 50 31.459553917306156 35.0 29.0 40.0 8.0 41.0 51 30.894877962093254 35.0 27.0 40.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 4.0 10 11.0 11 10.0 12 9.0 13 16.0 14 19.0 15 36.0 16 77.0 17 165.0 18 329.0 19 577.0 20 986.0 21 1538.0 22 2497.0 23 4340.0 24 8818.0 25 18816.0 26 33010.0 27 40279.0 28 37808.0 29 31639.0 30 26663.0 31 24168.0 32 23949.0 33 30055.0 34 57275.0 35 69748.0 36 63969.0 37 79722.0 38 149851.0 39 188201.0 40 133.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.548371449455807 16.026654089203127 18.057340715887168 35.367633745453894 2 50.28567532708483 17.30995772988705 18.771417267039368 13.632949675988742 3 23.54139051012493 17.134707763975847 45.987133433625196 13.336768292274026 4 22.68626456038859 19.15377066843109 44.32896475106234 13.831000020117981 5 18.936831775680044 22.506096865842125 43.3424013268926 15.214670031585229 6 21.110803132146074 24.86504187892999 42.07318027275511 11.950974716168822 7 60.41172565333143 4.442720755720772 31.037014849305145 4.108538741642655 8 60.529751140577744 3.879081994183668 30.837846839576986 4.753320025661602 9 55.82124950543297 5.854444173720999 32.882392519687684 5.441913801158348 10 32.96554684024758 18.39454042708238 38.02220130945702 10.61771142321302 11 26.24725892511864 17.473695740129337 41.42236359450198 14.856681740250044 12 24.625079074841125 15.145486531011867 45.40952385210154 14.819910542045461 13 20.372026171257666 18.37129298262477 46.072858385062624 15.183822461054941 14 15.605517691528764 20.960812408770547 45.68882848527252 17.74484141442817 15 15.001419435310634 19.176123980409557 50.75844787542946 15.064008708850347 16 17.568585549477937 18.302444781731086 48.08610942840346 16.042860240387515 17 17.376123533343318 18.706704428861702 44.92479228184844 18.99237975594654 18 16.719494993975783 20.102333462237432 47.201253573735755 15.976917970051034 19 18.60421449344042 20.419862258891587 44.65364660754961 16.322276640118382 20 20.154751978826944 20.96964196700204 44.80140199972729 14.074204054443726 21 19.097999155044807 20.12692210541375 46.08269384233315 14.692384897208294 22 17.26279224161248 20.019626207917096 44.45436683126155 18.26321471920887 23 17.245803724508843 19.76211605392513 45.73968227002354 17.252397951542488 24 18.64556812060059 17.752776840180527 45.9491328032618 17.65252223595709 25 16.828690922990607 19.24821341154012 44.65979376834369 19.263301897125586 26 15.045120160228539 20.52525812487007 44.88109155693053 19.548530157970855 27 15.808262231173481 20.250088854415115 46.42168181848664 17.51996709592477 28 13.296308797592996 20.28943068349722 47.454516598451804 18.959743920457974 29 15.610658953283812 19.05809849316324 46.61246733622287 18.718775217330077 30 18.05231122069201 19.357968173354408 45.25416833385118 17.335552272102394 31 18.362575190953166 21.29354145757006 43.03604918622768 17.307834165249094 32 18.877483732377208 21.300359217723493 41.93347207288968 17.88868497700962 33 19.115881804627584 22.391647908512365 40.08507670539005 18.40739358147 34 17.767530026086316 23.22073224979379 39.874843806232555 19.136893917887342 35 17.235856500678423 24.196566084213867 37.7536262660357 20.813951149072 36 18.710504491898043 25.30663155706465 36.82719325108805 19.15567069994926 37 18.424717398253314 26.103303595977295 38.353700926097716 17.118278079671676 38 18.209455003900654 26.550928668346145 35.87237152992773 19.36724479782547 39 20.4999988823344 23.776212052458753 35.836829763881966 19.88695930132488 40 20.871510927416562 23.562514389944585 35.95865531416462 19.60731936847423 41 17.001929090823744 25.21889480754916 34.51194896291809 23.267227138709007 42 17.13336656525714 24.43820538670112 35.21540769088052 23.21302035716122 43 18.59806733264634 23.229002975225825 35.84890055235034 22.324029139777497 44 17.638327882850763 23.526078491419682 36.02280931954283 22.812784306186725 45 18.353857399281566 22.916503673766826 35.16175974213219 23.567879184819418 46 19.76345725264384 23.59459139263369 35.97463793222923 20.667313422493244 47 17.23227997076187 23.28075089245598 38.68922413889454 20.797744997887612 48 17.080500982428063 21.305276946358756 38.51788600257957 23.096336068633608 49 17.739476619553336 20.68240190807871 40.13369515894322 21.444426313424728 50 17.958427310382444 20.164922735777147 39.058612619338746 22.818037334501668 51 16.76118392081563 20.486139828907753 36.7796924631338 25.972983787142823 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 391.0 1 634.5 2 878.0 3 37420.0 4 73962.0 5 49523.5 6 25085.0 7 23332.5 8 21580.0 9 20717.5 10 19855.0 11 18925.5 12 17996.0 13 16781.5 14 15567.0 15 14285.5 16 13004.0 17 11826.0 18 10648.0 19 10028.0 20 9408.0 21 8605.5 22 7803.0 23 7528.5 24 7254.0 25 7205.5 26 7365.5 27 7574.0 28 8159.0 29 8744.0 30 9162.5 31 9581.0 32 10880.0 33 12179.0 34 13384.5 35 14590.0 36 17078.0 37 19566.0 38 20264.5 39 20963.0 40 24377.0 41 27791.0 42 31373.0 43 34955.0 44 40256.5 45 45558.0 46 52502.0 47 59446.0 48 66159.0 49 72872.0 50 72797.5 51 72723.0 52 62369.5 53 52016.0 54 46098.0 55 40180.0 56 36387.5 57 32595.0 58 31818.0 59 31041.0 60 30761.0 61 30481.0 62 28399.5 63 26318.0 64 22677.5 65 19037.0 66 14904.0 67 10771.0 68 8500.0 69 6229.0 70 5100.5 71 3972.0 72 3191.0 73 2410.0 74 1790.0 75 957.5 76 745.0 77 541.5 78 338.0 79 249.0 80 160.0 81 122.5 82 85.0 83 54.5 84 24.0 85 20.5 86 17.0 87 9.0 88 1.0 89 1.0 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 894722.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.39387670928013 #Duplication Level Percentage of deduplicated Percentage of total 1 74.67769785441487 24.191001372287886 2 10.783347531254668 6.98628860881568 3 4.440796836537062 4.315638756412285 4 2.2687567488478275 2.9397530562209497 5 1.3251979998739367 2.1464150311650463 6 0.8548242087057752 1.6614642014953698 7 0.5675699610105885 1.2870053938607553 8 0.4094876925763307 1.0611915061828208 9 0.32835115967540834 0.9572910285486899 >10 3.5777000813588997 29.223147215624586 >50 0.6751478415325629 13.914250205254449 >100 0.08338198439482662 4.8084668307138845 >500 0.005629163503448164 1.2704126416052575 >1k 0.0017591135948275512 1.3043754089147008 >5k 0.0 0.0 >10k+ 3.5182271896551024E-4 3.9332987428976987 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 34512 3.8572875150046606 No Hit CCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTCTGC 3587 0.40090665033384665 TruSeq Adapter, Index 14 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTCTGC 3452 0.38581816474837993 TruSeq Adapter, Index 14 (95% over 21bp) CTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTCTGCT 2046 0.22867438153974085 TruSeq Adapter, Index 21 (95% over 23bp) TCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTCTGC 1296 0.144849461620481 TruSeq Adapter, Index 14 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCC 1064 0.11891961972545662 No Hit CGCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTCTG 965 0.10785473029611431 TruSeq Adapter, Index 21 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 952 0.1064017650175138 No Hit ACTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTCTGC 917 0.1024899354212817 TruSeq Adapter, Index 21 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.2427569680861765 0.0 2 0.0 0.0 0.0 1.3464517470230977 0.0 3 0.0 0.0 0.0 1.9105375747997702 0.0 4 0.0 0.0 0.0 2.478535232172675 0.0 5 0.0 0.0 0.0 3.911382529992556 0.0 6 0.0 0.0 0.0 4.576840627591587 0.0 7 0.0 0.0 0.0 5.355853550041242 0.0 8 0.0 0.0 0.0 6.4958724609431755 0.0 9 0.0 0.0 0.0 6.889961351123589 0.0 10 0.0 0.0 0.0 7.827012189261022 0.0 11 0.0 0.0 0.0 9.291712956650223 0.0 12 0.0 0.0 0.0 10.367577862173949 0.0 13 0.0 0.0 0.0 10.79542025344185 0.0 14 0.0 0.0 0.0 10.97402321614982 0.0 15 0.0 0.0 0.0 11.342294030995102 0.0 16 0.0 0.0 0.0 12.0432938946399 0.0 17 0.0 0.0 0.0 12.875731232718095 0.0 18 0.0 0.0 0.0 13.90577184868596 0.0 19 0.0 0.0 0.0 14.483604963329391 0.0 20 0.0 0.0 0.0 15.106815301289116 0.0 21 0.0 0.0 0.0 15.830056710352489 0.0 22 0.0 0.0 0.0 16.588169286102275 0.0 23 0.0 0.0 0.0 17.318340221878973 0.0 24 0.0 0.0 0.0 17.914055986105183 0.0 25 0.0 0.0 0.0 18.484288974675934 0.0 26 0.0 0.0 0.0 18.95996745357776 0.0 27 0.0 0.0 0.0 19.400327699553603 0.0 28 0.0 0.0 0.0 19.85644703047427 0.0 29 0.0 0.0 0.0 20.329554878498573 0.0 30 0.0 0.0 0.0 20.860669571107003 0.0 31 0.0 0.0 0.0 21.350430636555267 0.0 32 0.0 0.0 0.0 21.832032743131386 0.0 33 0.0 0.0 0.0 22.31911141114223 0.0 34 0.0 0.0 0.0 22.781713202536654 0.0 35 1.1176655989234645E-4 0.0 0.0 23.285221554851674 0.0 36 1.1176655989234645E-4 0.0 0.0 23.805383124590655 0.0 37 1.1176655989234645E-4 0.0 0.0 24.30810911098643 0.0 38 1.1176655989234645E-4 0.0 0.0 24.798540775794045 0.0 39 1.1176655989234645E-4 0.0 0.0 25.312555184738947 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGGTAT 130 0.0 45.000004 6 GCATAAG 25 3.89011E-5 45.0 1 CTATGCG 20 7.032449E-4 45.0 1 ACGCCCC 20 7.032449E-4 45.0 40 GGTCGAT 25 3.89011E-5 45.0 19 CGTGCAC 20 7.032449E-4 45.0 20 GAGTACG 20 7.032449E-4 45.0 1 ATTAACG 20 7.032449E-4 45.0 34 CGTCTAA 25 3.89011E-5 45.0 43 CGCGATT 20 7.032449E-4 45.0 43 CGATTCG 40 6.8121153E-9 45.0 10 ACGGGTC 55 1.8189894E-12 45.0 5 CTGCGTA 20 7.032449E-4 45.0 16 TAGCACG 20 7.032449E-4 45.0 1 CCGTATC 20 7.032449E-4 45.0 32 CCGTATA 25 3.89011E-5 45.0 30 CTAACGG 25 3.89011E-5 45.0 2 TACGAAT 55 1.8189894E-12 45.0 12 TATTCGA 20 7.032449E-4 45.0 14 AACGCTA 20 7.032449E-4 45.0 27 >>END_MODULE