SRR2934958.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934958.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1554523
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	59491	3.8269617110843646	No Hit
GCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC	4571	0.29404518299182447	No Hit
CCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC	3953	0.2542902227885982	No Hit
CTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGCT	2003	0.12884981438035975	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCG	1736	0.11167412769061634	No Hit
TCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC	1716	0.1103875593992498	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGC	1694	0.10897233427874661	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACCG	20	7.0340553E-4	45.0	1
TCCGCGC	20	7.0340553E-4	45.0	29
ATCGTAC	20	7.0340553E-4	45.0	39
GCTCGAT	20	7.0340553E-4	45.0	40
GTACGTC	20	7.0340553E-4	45.0	9
CGTTTTT	40585	0.0	44.595295	1
CGGTCTA	55	6.184564E-11	40.909092	31
TAACGGA	50	1.0822987E-9	40.5	20
TTAACGG	95	0.0	40.263157	2
GTTTTTT	45850	0.0	39.597057	2
CTACGTC	40	3.459263E-7	39.375	30
ACTCTCG	35	6.2497093E-6	38.57143	11
CGAATAT	105	0.0	38.57143	14
TATAGCG	70	0.0	38.57143	1
ATCTCGT	30	1.1401072E-4	37.499996	41
TAACGCG	60	1.5643309E-10	37.499996	1
ATCGACG	30	1.1401072E-4	37.499996	1
ACGGGAG	510	0.0	36.61765	5
CGGTTAG	25	0.0021073367	36.0	1
CGTTGCG	25	0.0021073367	36.0	2