SRR2934957.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934957.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1176684
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	46397	3.943029734406179	No Hit
GCTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCGTCTTCTGC	2221	0.18875076061202498	TruSeq Adapter, Index 22 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCGTCTTCTGC	2181	0.18535137726016498	TruSeq Adapter, Index 22 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCGTCTTCTGCT	1235	0.10495596098867666	TruSeq Adapter, Index 20 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	1203	0.10223645430718867	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTCGA	35	1.2119563E-7	45.000004	37
ACGCGAG	25	3.890862E-5	45.0	1
CACGGTA	20	7.033355E-4	45.0	18
CGGCATA	25	3.890862E-5	45.0	10
ATTCGCT	25	3.890862E-5	45.0	24
GTTACGT	25	3.890862E-5	45.0	30
GCTCTAT	20	7.033355E-4	45.0	41
TACGCTA	20	7.033355E-4	45.0	42
ACGATAG	20	7.033355E-4	45.0	1
AGGCGTA	30	2.165547E-6	44.999996	22
ATAACGG	65	0.0	44.999996	2
CGTTTTT	33270	0.0	44.472496	1
ACAACGA	60	3.6379788E-12	41.249996	13
CGCGGGT	55	6.184564E-11	40.909092	4
ATTCCGA	45	1.9283107E-8	40.0	27
GTTTTTT	37785	0.0	39.45018	2
AACGTAG	35	6.248414E-6	38.57143	1
CGTTAAT	35	6.248414E-6	38.57143	27
AAATGCG	35	6.248414E-6	38.57143	1
AGTACGG	135	0.0	38.333332	2