FastQCFastQC Report
Sat 14 Jan 2017
SRR2934956.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934956.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415691
Sequences flagged as poor quality0
Sequence length51
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT154323.712372892364761No Hit
CCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCTGC23150.5569040465153202TruSeq Adapter, Index 21 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCTGC17220.41425000781830734TruSeq Adapter, Index 21 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCTGCT13060.31417567375767097TruSeq Adapter, Index 14 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCTGC9410.22637006815158378TruSeq Adapter, Index 21 (95% over 23bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCC7280.17513008460611368No Hit
CGCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCTG6870.16526698918186825No Hit
ACTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCTGC5960.14337572860610404TruSeq Adapter, Index 14 (95% over 21bp)

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACCA351.2094279E-745.00000443
ACCGATT351.2094279E-745.00000410
CCTACAC351.2094279E-745.00000428
CGACAGG351.2094279E-745.0000042
ACGATTG351.2094279E-745.0000041
CGAGAGA351.2094279E-745.00000432
CGATAGC351.2094279E-745.00000413
TGGAGTA207.0280855E-445.033
AGGTACG207.0280855E-445.01
TCTTGCG253.8864935E-545.01
GTCGATT207.0280855E-445.09
ATGATCG253.8864935E-545.027
TTGTGCG750.045.01
GTACACG207.0280855E-445.01
CAAGTAG207.0280855E-445.01
GGTCGAT207.0280855E-445.08
GCGGTTG207.0280855E-445.05
GCGGTAT253.8864935E-545.021
TAGACGA207.0280855E-445.014
TGGACCG207.0280855E-445.018