Basic Statistics
Measure | Value |
---|---|
Filename | SRR2934956.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 415691 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 38 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 15432 | 3.712372892364761 | No Hit |
CCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCTGC | 2315 | 0.5569040465153202 | TruSeq Adapter, Index 21 (95% over 23bp) |
GCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCTGC | 1722 | 0.41425000781830734 | TruSeq Adapter, Index 21 (95% over 23bp) |
CTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCTGCT | 1306 | 0.31417567375767097 | TruSeq Adapter, Index 14 (95% over 22bp) |
TCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCTGC | 941 | 0.22637006815158378 | TruSeq Adapter, Index 21 (95% over 23bp) |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCC | 728 | 0.17513008460611368 | No Hit |
CGCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCTG | 687 | 0.16526698918186825 | No Hit |
ACTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCTGC | 596 | 0.14337572860610404 | TruSeq Adapter, Index 14 (95% over 21bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGCACCA | 35 | 1.2094279E-7 | 45.000004 | 43 |
ACCGATT | 35 | 1.2094279E-7 | 45.000004 | 10 |
CCTACAC | 35 | 1.2094279E-7 | 45.000004 | 28 |
CGACAGG | 35 | 1.2094279E-7 | 45.000004 | 2 |
ACGATTG | 35 | 1.2094279E-7 | 45.000004 | 1 |
CGAGAGA | 35 | 1.2094279E-7 | 45.000004 | 32 |
CGATAGC | 35 | 1.2094279E-7 | 45.000004 | 13 |
TGGAGTA | 20 | 7.0280855E-4 | 45.0 | 33 |
AGGTACG | 20 | 7.0280855E-4 | 45.0 | 1 |
TCTTGCG | 25 | 3.8864935E-5 | 45.0 | 1 |
GTCGATT | 20 | 7.0280855E-4 | 45.0 | 9 |
ATGATCG | 25 | 3.8864935E-5 | 45.0 | 27 |
TTGTGCG | 75 | 0.0 | 45.0 | 1 |
GTACACG | 20 | 7.0280855E-4 | 45.0 | 1 |
CAAGTAG | 20 | 7.0280855E-4 | 45.0 | 1 |
GGTCGAT | 20 | 7.0280855E-4 | 45.0 | 8 |
GCGGTTG | 20 | 7.0280855E-4 | 45.0 | 5 |
GCGGTAT | 25 | 3.8864935E-5 | 45.0 | 21 |
TAGACGA | 20 | 7.0280855E-4 | 45.0 | 14 |
TGGACCG | 20 | 7.0280855E-4 | 45.0 | 18 |