SRR2934950.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934950.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1592794
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	59903	3.7608755432278125	No Hit
GCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGC	6492	0.4075856639339425	TruSeq Adapter, Index 19 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGC	4926	0.30926786514765875	TruSeq Adapter, Index 19 (95% over 21bp)
GAATGATACCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCG	4351	0.27316777938641157	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGC	4298	0.2698402932205923	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTC	3703	0.2324845523024321	No Hit
CTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGCT	3084	0.19362202519597638	TruSeq Adapter, Index 16 (95% over 23bp)
TCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGC	1921	0.12060567782148854	TruSeq Adapter, Index 19 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	1644	0.10321485389824421	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGCG	20	7.0341065E-4	45.0	13
CTCGTCA	20	7.0341065E-4	45.0	12
CATGCGA	20	7.0341065E-4	45.0	25
CACGCGA	20	7.0341065E-4	45.0	15
TATTGCG	50	2.1827873E-11	45.0	1
TGCGCGA	20	7.0341065E-4	45.0	18
GTTAACG	25	3.891487E-5	45.0	1
GGACGTA	20	7.0341065E-4	45.0	8
TACTCGT	20	7.0341065E-4	45.0	13
CTCGAAT	20	7.0341065E-4	45.0	35
TTACGAG	45	3.8562575E-10	45.0	1
AATAGCG	20	7.0341065E-4	45.0	1
TCGACCA	20	7.0341065E-4	45.0	30
ATCGAAC	25	3.891487E-5	45.0	29
TATCGCG	60	0.0	44.999996	1
GCGTACG	30	2.1660326E-6	44.999996	1
TCGAACG	30	2.1660326E-6	44.999996	1
GTTATCG	30	2.1660326E-6	44.999996	27
CGTTTTT	40790	0.0	44.25533	1
CGAATAT	75	0.0	42.0	14