SRR2934946.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934946.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	572151
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23763	4.153274223063492	No Hit
CCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTGC	2900	0.5068592032522883	TruSeq Adapter, Index 15 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTGC	2146	0.37507581040669336	TruSeq Adapter, Index 15 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTGCT	1550	0.27090750518656787	TruSeq Adapter, Index 21 (95% over 23bp)
CGCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTG	1039	0.1815954179928026	TruSeq Adapter, Index 21 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCC	848	0.14821262219239326	No Hit
TCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTGC	770	0.13457985741526277	TruSeq Adapter, Index 15 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	626	0.10941167628825259	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCGATG	30	2.1635824E-6	45.000004	9
GCGATAT	30	2.1635824E-6	45.000004	9
TTCGACC	30	2.1635824E-6	45.000004	22
TGTAACG	30	2.1635824E-6	45.000004	1
CGGGTAC	35	1.210501E-7	45.0	6
CACGGAT	20	7.0303126E-4	45.0	4
CCAGCGT	35	1.210501E-7	45.0	23
CGATTGC	20	7.0303126E-4	45.0	11
CGATTGA	25	3.888342E-5	45.0	10
TACGGAC	20	7.0303126E-4	45.0	9
CGCTAAG	20	7.0303126E-4	45.0	1
ACCAGTT	20	7.0303126E-4	45.0	12
CCGAGGT	20	7.0303126E-4	45.0	31
GTCCGTT	20	7.0303126E-4	45.0	9
TGTTACG	20	7.0303126E-4	45.0	1
ACGCTTT	20	7.0303126E-4	45.0	11
AATTACG	20	7.0303126E-4	45.0	19
CGTCGCT	20	7.0303126E-4	45.0	32
GACGCTT	20	7.0303126E-4	45.0	10
GTCCCGC	25	3.888342E-5	45.0	15