##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934945.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 754850 Sequences flagged as poor quality 0 Sequence length 51 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.48183347684971 34.0 31.0 34.0 31.0 34.0 2 32.65030668344704 34.0 31.0 34.0 31.0 34.0 3 32.7172179903292 34.0 31.0 34.0 31.0 34.0 4 36.134066370802145 37.0 37.0 37.0 35.0 37.0 5 36.012821090282834 37.0 35.0 37.0 35.0 37.0 6 35.99902762138173 37.0 35.0 37.0 35.0 37.0 7 36.19514738027423 37.0 36.0 37.0 35.0 37.0 8 36.224954626747035 37.0 37.0 37.0 35.0 37.0 9 38.033541763264225 39.0 39.0 39.0 35.0 39.0 10 37.51927402795258 39.0 37.0 39.0 35.0 39.0 11 37.38798966682122 39.0 37.0 39.0 34.0 39.0 12 37.31271908326158 39.0 37.0 39.0 34.0 39.0 13 37.22784526727165 39.0 37.0 39.0 34.0 39.0 14 38.46615751473803 40.0 38.0 41.0 34.0 41.0 15 38.542399152149436 40.0 38.0 41.0 34.0 41.0 16 38.65458435450752 40.0 38.0 41.0 35.0 41.0 17 38.660743194012056 40.0 38.0 41.0 35.0 41.0 18 38.21600582897264 39.0 38.0 40.0 35.0 41.0 19 37.777800887593564 38.0 37.0 40.0 34.0 41.0 20 37.249189905279195 38.0 35.0 40.0 34.0 41.0 21 37.180197390209976 38.0 35.0 40.0 34.0 41.0 22 37.00654434655892 38.0 35.0 40.0 34.0 41.0 23 36.89778234086242 38.0 35.0 40.0 33.0 41.0 24 36.679434324700274 37.0 35.0 40.0 33.0 41.0 25 36.553161555275885 37.0 35.0 40.0 33.0 41.0 26 36.68712989335629 37.0 35.0 40.0 33.0 41.0 27 36.72018944161091 37.0 35.0 40.0 33.0 41.0 28 36.70029542293171 38.0 35.0 40.0 33.0 41.0 29 36.57519374710208 38.0 35.0 40.0 33.0 41.0 30 36.27853878253958 38.0 35.0 40.0 33.0 41.0 31 35.77108299662184 38.0 35.0 40.0 31.0 41.0 32 35.08650592833013 38.0 35.0 40.0 24.0 41.0 33 34.24600516658939 38.0 35.0 40.0 18.0 41.0 34 33.56174869179307 38.0 34.0 40.0 12.0 41.0 35 33.11508909054779 38.0 33.0 40.0 10.0 41.0 36 32.9396794065046 38.0 33.0 40.0 10.0 41.0 37 32.711863284096175 37.0 33.0 40.0 10.0 41.0 38 32.607559117705506 37.0 32.0 40.0 10.0 41.0 39 32.569189905279195 37.0 32.0 40.0 9.0 41.0 40 32.439614492945616 37.0 32.0 40.0 8.0 41.0 41 32.31848976617871 37.0 31.0 40.0 8.0 41.0 42 32.19034245214281 37.0 31.0 40.0 8.0 41.0 43 32.03702589918527 37.0 31.0 40.0 8.0 41.0 44 31.907820096707955 37.0 31.0 40.0 7.0 41.0 45 31.857321322116977 37.0 30.0 40.0 7.0 41.0 46 31.808800423925284 36.0 30.0 40.0 7.0 41.0 47 31.78670861760615 36.0 30.0 40.0 8.0 41.0 48 31.74969464131947 36.0 30.0 40.0 7.0 41.0 49 31.65716632443532 36.0 29.0 40.0 7.0 41.0 50 31.554308803073457 36.0 29.0 40.0 7.0 41.0 51 30.969215075842882 35.0 27.0 40.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 5.0 10 3.0 11 3.0 12 7.0 13 10.0 14 18.0 15 29.0 16 46.0 17 89.0 18 221.0 19 485.0 20 814.0 21 1353.0 22 2131.0 23 3755.0 24 7682.0 25 16574.0 26 29005.0 27 34785.0 28 31604.0 29 24277.0 30 19715.0 31 17849.0 32 18624.0 33 23174.0 34 42893.0 35 60307.0 36 55871.0 37 71502.0 38 132608.0 39 159290.0 40 119.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.8802411075048 15.608266543021793 19.53209246870239 34.97939988077101 2 48.97449824468437 18.172087169636352 19.17890971716235 13.674504868516923 3 23.800622640259654 18.14519440948533 44.43452341524806 13.619659535006956 4 22.04994369742333 19.680731271113466 43.665363979598595 14.603961051864609 5 19.177319997350466 22.708617606146916 43.0966417168974 15.01742067960522 6 19.830297410081474 25.360667682320994 42.30257667086176 12.506458236735776 7 60.79009074650593 4.098430151685766 30.573358945485857 4.5381201563224485 8 62.00529906603961 3.2610452407763133 30.123865668675897 4.609790024508181 9 58.17433927270319 4.567265019540305 32.26468834867855 4.993707359077963 10 30.468569914552564 20.838312247466384 37.91534742001722 10.777770417963833 11 22.617738623567597 18.778830231171757 43.72590580910114 14.877525336159502 12 20.141882493210574 17.09465456713254 47.02960853149632 15.73385440816056 13 16.7088825594489 21.282109028283767 47.28634828111545 14.722660131151885 14 13.84341259852951 23.842352785321587 46.0965754785719 16.217659137577 15 12.647280916738424 20.50420613366894 51.643637808836196 15.20487514075644 16 14.681327416042922 20.143737166324435 48.590580910114596 16.58435450751805 17 14.597469695966087 19.128038683182087 45.484135921043915 20.790355699807908 18 16.455189772802544 18.823607339206465 48.16930515996556 16.551897728025438 19 16.67973769623104 19.992448830893554 45.933629197853875 17.394184275021527 20 18.35795191097569 20.244021991124065 45.63595416307876 15.762071934821487 21 16.339140226535072 21.184473736503943 46.424852619725776 16.051533417235213 22 15.948201629462808 19.80247731337352 44.957806186659596 19.291514870504074 23 14.976220441147248 20.272107041134 45.35934291581109 19.39232960190766 24 16.017089487977742 18.593097966483406 47.5334172352123 17.856395310326555 25 14.71060475591177 20.844406173411937 45.52016957011327 18.924819500563025 26 15.109889381996421 21.25548122143472 45.89309134265086 17.741538053917996 27 15.434192223620588 20.909982115652117 46.568192356097235 17.08763330463006 28 13.943432470027158 19.93561634761873 48.299794661190965 17.821156521163147 29 15.431807643902761 19.726435715705108 46.28111545340134 18.560641186990793 30 15.65675299728423 20.21527455785918 45.726965622309066 18.401006822547526 31 18.596409882758163 22.764390276213817 41.02417698880572 17.615022852222296 32 18.40723322514407 23.38451347949924 40.880572299132275 17.327680996224416 33 18.224945353381468 22.78174471749354 39.522421673180105 19.47088825594489 34 17.84367755183149 24.042392528316885 38.304033914022654 19.80989600582897 35 17.22951579784063 24.173941842750217 37.66615883950454 20.930383519904616 36 21.354308803073458 23.787242498509638 36.37994303504007 18.47850566337683 37 19.083923958402334 26.564350533218523 37.33311253891502 17.01861296946413 38 17.78989203152944 27.43988871961317 34.75485195734252 20.01536729151487 39 18.804265748161885 25.88421540703451 35.4516791415513 19.8598397032523 40 19.15413658342717 25.054514141882496 35.94396237663112 19.847386898059217 41 17.991918924289592 25.23057561104855 34.37053719281977 22.406968271842086 42 20.917268331456583 23.50056302576671 34.92614426707293 20.656024375703783 43 20.95197721401603 24.354639994700932 34.732065973372194 19.96131681791084 44 18.506855666688747 25.695303702722395 34.18930913426508 21.608531496323774 45 18.364045836921242 25.74776445651454 32.91051202225608 22.97767768430814 46 19.87533947141816 24.738424852619726 35.34861230708088 20.037623368881235 47 17.449691991786448 24.854606875538188 37.53924620785586 20.1564549248195 48 18.319798635490496 22.852619725773334 37.21693051599655 21.610651122739615 49 18.684506855666687 21.551434059746967 38.74942041465192 21.014638669934424 50 17.992316354242565 22.229979466119097 38.04888388421541 21.72882029542293 51 17.16698681857323 22.540637212691266 35.00099357488243 25.291382393853084 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 359.0 1 482.5 2 606.0 3 26088.0 4 51570.0 5 34798.0 6 18026.0 7 17969.0 8 17912.0 9 18062.5 10 18213.0 11 17617.5 12 17022.0 13 15999.0 14 14976.0 15 13850.5 16 12725.0 17 11837.0 18 10949.0 19 9736.0 20 8523.0 21 7771.0 22 7019.0 23 6443.0 24 5867.0 25 5974.5 26 6135.5 27 6189.0 28 6489.5 29 6790.0 30 7915.5 31 9041.0 32 10042.0 33 11043.0 34 12772.5 35 14502.0 36 16118.5 37 17735.0 38 19627.5 39 21520.0 40 24126.5 41 26733.0 42 31243.0 43 35753.0 44 41836.5 45 47920.0 46 53023.5 47 58127.0 48 63966.0 49 69805.0 50 69053.5 51 68302.0 52 57149.5 53 45997.0 54 39462.0 55 32927.0 56 27575.0 57 22223.0 58 21326.0 59 20429.0 60 17298.5 61 14168.0 62 13038.0 63 11908.0 64 10358.5 65 8809.0 66 7195.5 67 5582.0 68 4333.0 69 3084.0 70 2796.5 71 2509.0 72 2182.5 73 1856.0 74 1473.5 75 805.5 76 520.0 77 396.5 78 273.0 79 199.5 80 126.0 81 75.5 82 25.0 83 17.0 84 9.0 85 6.0 86 3.0 87 2.0 88 1.0 89 1.0 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 754850.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.51315463524979 #Duplication Level Percentage of deduplicated Percentage of total 1 75.20391087556118 25.20320294348225 2 10.610861824843736 7.11206906298514 3 4.401919322198245 4.425666088101712 4 2.360386084028484 3.1641593533175314 5 1.3764325152482166 2.3064297864249648 6 0.8603037864383739 1.7298896296920079 7 0.5769195349245727 1.3534075510216517 8 0.43729788839030875 1.1724185404234095 9 0.3155761932515744 0.9518358387279136 >10 2.9404555377053514 24.602799289069168 >50 0.8478355761061861 18.343411509192016 >100 0.06245936983487219 3.7090339950619127 >500 0.0036266730871861276 0.8043330229233117 >1k 0.0016118547054160568 1.3311468446868842 >5k 0.0 0.0 >10k+ 4.029636763540142E-4 3.7901965448901382 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 28066 3.71808968669272 No Hit CCTGTCTCTTATACACATCTGACGCGTGACATGTCGTATGCCGTCTTCTGC 3596 0.47638603696098564 RNA PCR Primer, Index 41 (95% over 24bp) GCTGTCTCTTATACACATCTGACGCGTGACATGTCGTATGCCGTCTTCTGC 3205 0.42458766642379275 Illumina PCR Primer Index 3 (95% over 22bp) CTGTCTCTTATACACATCTGACGCGTGACATGTCGTATGCCGTCTTCTGCT 1818 0.2408425515002981 RNA PCR Primer, Index 41 (96% over 25bp) TCTGTCTCTTATACACATCTGACGCGTGACATGTCGTATGCCGTCTTCTGC 1238 0.16400609392594556 Illumina PCR Primer Index 3 (95% over 22bp) CGCTGTCTCTTATACACATCTGACGCGTGACATGTCGTATGCCGTCTTCTG 924 0.12240842551500299 RNA PCR Primer, Index 41 (95% over 23bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGACATGTCGTATGCC 851 0.11273762999271378 No Hit ACTGTCTCTTATACACATCTGACGCGTGACATGTCGTATGCCGTCTTCTGC 830 0.10995562032191826 TruSeq Adapter, Index 11 (95% over 23bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.2571371795721004 0.0 2 0.0 0.0 0.0 1.5216268132741604 0.0 3 0.0 0.0 0.0 2.1171093594753922 0.0 4 0.0 0.0 0.0 2.749155461349937 0.0 5 0.0 0.0 0.0 4.278598397032523 0.0 6 0.0 0.0 0.0 5.006822547525998 0.0 7 0.0 0.0 0.0 5.878386434390938 0.0 8 0.0 0.0 0.0 7.199973504669802 0.0 9 0.0 0.0 0.0 7.651983837848579 0.0 10 0.0 0.0 0.0 8.642114327349805 0.0 11 0.0 0.0 0.0 10.160031794396238 0.0 12 0.0 0.0 0.0 11.356693382791283 0.0 13 0.0 0.0 0.0 11.79890044379678 0.0 14 0.0 0.0 0.0 11.963568920977679 0.0 15 0.0 0.0 0.0 12.308538120156323 0.0 16 0.0 0.0 0.0 13.080876995429556 0.0 17 0.0 0.0 0.0 14.092998608995165 0.0 18 0.0 0.0 0.0 15.315625620984301 0.0 19 0.0 0.0 0.0 15.940253030403392 0.0 20 0.0 0.0 0.0 16.51228720937935 0.0 21 0.0 0.0 0.0 17.250314632046102 0.0 22 0.0 0.0 0.0 18.0394780419951 0.0 23 0.0 0.0 0.0 18.802411075048024 0.0 24 0.0 0.0 0.0 19.4408160561701 0.0 25 0.0 0.0 0.0 20.007551169106446 0.0 26 1.3247665099026297E-4 0.0 0.0 20.532821090282837 0.0 27 1.3247665099026297E-4 0.0 0.0 21.012121613565608 0.0 28 1.3247665099026297E-4 0.0 0.0 21.49062727694244 0.0 29 1.3247665099026297E-4 0.0 0.0 22.037490892230245 0.0 30 1.3247665099026297E-4 0.0 0.0 22.622640259654236 0.0 31 1.3247665099026297E-4 0.0 0.0 23.166854341922235 0.0 32 1.3247665099026297E-4 0.0 0.0 23.66655626945751 0.0 33 1.3247665099026297E-4 0.0 0.0 24.14585679274028 0.0 34 1.3247665099026297E-4 0.0 0.0 24.62568722262701 0.0 35 1.3247665099026297E-4 0.0 0.0 25.179969530370272 0.0 36 1.3247665099026297E-4 0.0 0.0 25.694243889514475 0.0 37 1.3247665099026297E-4 0.0 0.0 26.169040206663574 0.0 38 1.3247665099026297E-4 0.0 0.0 26.652579982778036 0.0 39 1.3247665099026297E-4 0.0 0.0 27.106842419023646 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGCAAC 30 2.1645083E-6 45.000004 19 ACGATAC 35 1.2111923E-7 45.000004 45 ACGGCAT 60 0.0 45.000004 45 TATTCGG 30 2.1645083E-6 45.000004 1 AACGATA 35 1.2111923E-7 45.000004 44 GTATACG 30 2.1645083E-6 45.000004 1 CACACGG 65 0.0 45.000004 2 TGCGTAG 30 2.1645083E-6 45.000004 1 TCACGGC 50 2.1827873E-11 45.0 43 AACCGGA 20 7.0317474E-4 45.0 10 GATACGT 20 7.0317474E-4 45.0 9 GCCTTAC 25 3.889529E-5 45.0 35 CATGCGA 25 3.889529E-5 45.0 43 TCCGAAC 25 3.889529E-5 45.0 16 TAGCGAG 20 7.0317474E-4 45.0 1 CTCCCGA 20 7.0317474E-4 45.0 14 TCCCTCG 25 3.889529E-5 45.0 12 GAATCGG 40 6.8102963E-9 45.0 2 CCTACGG 20 7.0317474E-4 45.0 2 TAACGCG 40 6.8102963E-9 45.0 1 >>END_MODULE