SRR2934942.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934942.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	722164
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	25636	3.549886175439374	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCG	9761	1.3516320392597803	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGC	9724	1.34650854930459	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTC	7436	1.0296830082917454	No Hit
GCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTCTGC	4464	0.6181421394586271	TruSeq Adapter, Index 15 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTCTGC	3287	0.455159769802981	TruSeq Adapter, Index 15 (95% over 23bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTGCAGTAT	3037	0.42054159443007405	No Hit
CTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTCTGCT	1970	0.272791221938507	TruSeq Adapter, Index 14 (95% over 22bp)
GAATGACTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCT	1686	0.2334649747148847	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTGCAGTATCGTA	1608	0.2226641039985377	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTC	1310	0.1813992389540326	No Hit
GAACTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTCT	1229	0.17018295013321072	No Hit
CGCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTCTG	1010	0.13985742850654423	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCC	1005	0.13916506499908607	No Hit
TCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTCTGC	1003	0.1388881195961028	TruSeq Adapter, Index 15 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTGCGG	60	0.0	45.000004	2
GCGACAA	30	2.1643773E-6	45.000004	11
ATTAGCG	30	2.1643773E-6	45.000004	1
GCGAAGA	30	2.1643773E-6	45.000004	12
CTGAGCG	30	2.1643773E-6	45.000004	1
CTGCGAA	30	2.1643773E-6	45.000004	10
CATCGAA	30	2.1643773E-6	45.000004	42
TTACGAG	30	2.1643773E-6	45.000004	1
GCGCTTC	55	1.8189894E-12	45.000004	25
TAGTGCG	30	2.1643773E-6	45.000004	1
TGTTTCG	20	7.0315425E-4	45.0	16
AACCGTC	20	7.0315425E-4	45.0	19
AACCGCG	20	7.0315425E-4	45.0	15
GGTGTCG	20	7.0315425E-4	45.0	12
CACGGTG	20	7.0315425E-4	45.0	43
GCGAACC	20	7.0315425E-4	45.0	33
CGTGATA	20	7.0315425E-4	45.0	22
TAGCGGC	20	7.0315425E-4	45.0	13
TAGCGAC	20	7.0315425E-4	45.0	29
ATAGCGA	20	7.0315425E-4	45.0	28