SRR2934940.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934940.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	721486
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27444	3.803816013061931	No Hit
CCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGC	1708	0.2367336303129929	No Hit
GCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGC	1365	0.18919286029112137	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	797	0.11046645395752655	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACCA	25	3.8893573E-5	45.0	15
CTACTCG	20	7.0315396E-4	45.0	43
GTCGACG	20	7.0315396E-4	45.0	1
CCTAGCG	20	7.0315396E-4	45.0	45
GGCCGAT	75	0.0	45.0	8
ATAGCGC	20	7.0315396E-4	45.0	43
CACGCGA	25	3.8893573E-5	45.0	11
CGATTAC	25	3.8893573E-5	45.0	10
CGTTATG	20	7.0315396E-4	45.0	1
GCCGATG	45	3.8380676E-10	45.0	9
TACGAAC	20	7.0315396E-4	45.0	36
TCATGCG	20	7.0315396E-4	45.0	1
GTATAGT	20	7.0315396E-4	45.0	9
GACGATT	25	3.8893573E-5	45.0	20
TCGAAGT	20	7.0315396E-4	45.0	14
TGCGTAG	55	1.8189894E-12	45.0	1
ACGGTTG	20	7.0315396E-4	45.0	1
AACGTCG	30	2.1643737E-6	44.999996	1
TAGAACG	30	2.1643737E-6	44.999996	1
CGATTTA	30	2.1643737E-6	44.999996	10