SRR2934935.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934935.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1264702
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	51766	4.093138146377566	No Hit
GCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC	3399	0.26875896456240284	TruSeq Adapter, Index 23 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC	3337	0.26385662393196185	TruSeq Adapter, Index 23 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGCT	1875	0.1482562690657562	TruSeq Adapter, Index 20 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC	1502	0.11876315527294178	TruSeq Adapter, Index 23 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTACGGA	30	2.1656742E-6	45.000004	12
GATTACC	30	2.1656742E-6	45.000004	21
GTCGCGA	20	7.0335553E-4	45.0	17
CGAAACG	20	7.0335553E-4	45.0	1
ACCGCGT	20	7.0335553E-4	45.0	16
TTAAGCG	40	6.8157533E-9	45.0	1
CGAATGT	20	7.0335553E-4	45.0	13
ACGCTAG	35	1.2120654E-7	45.0	1
TCGAGTA	20	7.0335553E-4	45.0	39
TTGCACG	35	1.2120654E-7	45.0	1
CGTCCGC	25	3.8910286E-5	45.0	41
TATCGTG	20	7.0335553E-4	45.0	1
TATCGTA	20	7.0335553E-4	45.0	25
AGGTGCG	25	3.8910286E-5	45.0	1
GCGTAAG	70	0.0	45.0	1
ACGACCG	20	7.0335553E-4	45.0	44
CGTTTTT	34515	0.0	44.511078	1
ATGCGCG	100	0.0	42.75	1
ACGGGCC	130	0.0	41.538464	5
TATCGCG	55	6.184564E-11	40.909092	1