SRR2934934.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934934.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	550887
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18604	3.3770991147004743	No Hit
GCTGTCTCTTATACACATCTGACGCAGCAGAACTCGTATGCCGTCTTCTGC	767	0.13923000542761038	Illumina PCR Primer Index 9 (95% over 24bp)
CCTGTCTCTTATACACATCTGACGCAGCAGAACTCGTATGCCGTCTTCTGC	609	0.11054898736038425	Illumina PCR Primer Index 9 (95% over 24bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCAGAACTCGTATGC	571	0.10365102098978557	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGACTT	20	7.0300826E-4	45.000004	44
CGTGAGT	25	3.8881506E-5	45.000004	32
TAGCGTA	25	3.8881506E-5	45.000004	1
CATTGCG	20	7.0300826E-4	45.000004	1
CGTGAAC	25	3.8881506E-5	45.000004	34
TAGCGCG	25	3.8881506E-5	45.000004	1
GCACGTT	20	7.0300826E-4	45.000004	34
ATCGTGA	25	3.8881506E-5	45.000004	30
TCGTGAT	20	7.0300826E-4	45.000004	44
TCTACGA	20	7.0300826E-4	45.000004	15
CGAATAT	40	6.8048394E-9	45.000004	14
CATACCA	25	3.8881506E-5	45.000004	15
TCCGTGA	20	7.0300826E-4	45.000004	36
ACGCTAG	20	7.0300826E-4	45.000004	1
ATGCGTG	20	7.0300826E-4	45.000004	12
CTCGAAT	20	7.0300826E-4	45.000004	43
ACGTATG	20	7.0300826E-4	45.000004	1
CGGTCGA	20	7.0300826E-4	45.000004	13
GCTACGA	40	6.8048394E-9	45.000004	10
ACATACC	25	3.8881506E-5	45.000004	14