##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934933.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1086306 Sequences flagged as poor quality 0 Sequence length 51 %GC 37 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.595000856112364 34.0 31.0 34.0 31.0 34.0 2 32.75668181893499 34.0 31.0 34.0 31.0 34.0 3 32.80677359786285 34.0 31.0 34.0 31.0 34.0 4 36.20152148657929 37.0 37.0 37.0 35.0 37.0 5 36.090982651297146 37.0 35.0 37.0 35.0 37.0 6 36.08663396869758 37.0 36.0 37.0 35.0 37.0 7 36.25720377131306 37.0 37.0 37.0 35.0 37.0 8 36.27813525838944 37.0 37.0 37.0 35.0 37.0 9 38.074224942143374 39.0 39.0 39.0 37.0 39.0 10 37.587973370302656 39.0 38.0 39.0 35.0 39.0 11 37.464467654601926 39.0 37.0 39.0 35.0 39.0 12 37.460406183892935 39.0 37.0 39.0 35.0 39.0 13 37.468862364748055 39.0 37.0 39.0 35.0 39.0 14 38.76392931641729 40.0 38.0 41.0 35.0 41.0 15 38.815713067956914 40.0 38.0 41.0 35.0 41.0 16 38.89771574491902 40.0 38.0 41.0 35.0 41.0 17 38.89628428822081 40.0 38.0 41.0 35.0 41.0 18 38.38859492629149 39.0 38.0 41.0 35.0 41.0 19 37.883180245713454 38.0 37.0 41.0 35.0 41.0 20 37.313590277509284 38.0 35.0 41.0 34.0 41.0 21 37.26423954208114 38.0 35.0 41.0 34.0 41.0 22 37.09067702838795 38.0 35.0 40.0 34.0 41.0 23 36.964746581534115 38.0 35.0 40.0 34.0 41.0 24 36.75552836861805 37.0 35.0 40.0 33.0 41.0 25 36.62313841587913 37.0 35.0 40.0 33.0 41.0 26 36.75998475567658 38.0 35.0 40.0 33.0 41.0 27 36.803321531870395 38.0 35.0 40.0 33.0 41.0 28 36.7547127604929 38.0 35.0 40.0 33.0 41.0 29 36.604915189642696 38.0 35.0 40.0 33.0 41.0 30 36.31384250846447 38.0 35.0 40.0 33.0 41.0 31 35.7609494930526 38.0 35.0 40.0 31.0 41.0 32 34.99288874405554 38.0 35.0 40.0 23.0 41.0 33 34.00631958214352 38.0 34.0 40.0 16.0 41.0 34 33.17132925713381 38.0 33.0 40.0 10.0 41.0 35 32.65012344587989 38.0 33.0 41.0 8.0 41.0 36 32.433355794776055 38.0 32.0 41.0 8.0 41.0 37 32.216729908515646 37.0 31.0 40.0 8.0 41.0 38 32.08072771392223 37.0 31.0 40.0 8.0 41.0 39 32.00247904365805 37.0 30.0 40.0 7.0 41.0 40 31.850973850830243 37.0 30.0 40.0 7.0 41.0 41 31.723331179244155 37.0 29.0 40.0 7.0 41.0 42 31.58162064832561 37.0 29.0 40.0 7.0 41.0 43 31.467406053174702 37.0 28.0 40.0 7.0 41.0 44 31.342780947541485 37.0 27.0 40.0 7.0 41.0 45 31.287662039977686 36.0 26.0 40.0 7.0 41.0 46 31.225729214420245 36.0 26.0 40.0 7.0 41.0 47 31.202396930514976 36.0 26.0 40.0 7.0 41.0 48 31.165610794748442 36.0 26.0 40.0 7.0 41.0 49 31.045957584695287 36.0 26.0 40.0 7.0 41.0 50 30.922843103140366 35.0 26.0 40.0 7.0 41.0 51 30.34102913911918 35.0 24.0 39.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 1.0 7 2.0 8 2.0 9 7.0 10 10.0 11 4.0 12 15.0 13 15.0 14 22.0 15 56.0 16 80.0 17 177.0 18 366.0 19 740.0 20 1233.0 21 1957.0 22 3260.0 23 5723.0 24 11648.0 25 25941.0 26 45893.0 27 56601.0 28 51503.0 29 39406.0 30 29932.0 31 25699.0 32 25462.0 33 30738.0 34 52676.0 35 74994.0 36 74951.0 37 97160.0 38 181528.0 39 248354.0 40 150.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.240293250704685 15.435153630744928 19.318681844710422 37.00587127383997 2 50.88593821630369 17.85629463521328 18.90222460338063 12.355542545102391 3 22.204424904216676 17.752180324880833 47.1742768612159 12.86911790968659 4 20.580112785900106 19.84302765519108 46.316599558503775 13.260260000405042 5 18.488805180124203 22.22522935526454 45.70397291370939 13.581992550901864 6 19.984608388428306 24.06099202250563 44.49473721032564 11.459662378740429 7 59.96164984820115 4.121214464432674 32.44822361286783 3.468912074498346 8 61.333546901149404 3.0461950868355694 31.978742637893927 3.6415153741211044 9 57.16372734754296 4.973828737022534 33.76451938956427 4.097924525870242 10 29.251334338574953 21.00264566337662 39.24796512216631 10.498054875882119 11 21.194580532557126 18.585923303378607 46.03758057122027 14.181915592844005 12 19.410368717470032 17.461194175490146 48.180439029150165 14.947998077889654 13 16.313359219225525 19.677972873205153 49.21854431440128 14.790123593168039 14 14.499965939615542 21.666639050138727 48.09528806800294 15.738106942242794 15 13.320924306779123 20.138616559238372 52.04187402076394 14.49858511321856 16 15.43349663906855 19.180599205012218 49.84341428658223 15.542489869337 17 15.968520840352534 18.48236132360495 47.174921246867825 18.37419658917469 18 15.987392134444622 19.10364114715375 49.00138634970257 15.907580368699058 19 16.74518966110838 19.535379533943477 47.502269158045706 16.21716164690244 20 18.201961509924462 19.94171071502873 47.151999528677926 14.704328246368886 21 17.439469173510965 19.45805325571248 48.178321762008125 14.924155808768433 22 16.402100329004902 18.721152235189717 46.92462344864155 17.952123987163837 23 15.503090289476445 19.936279464533936 47.549769586101895 17.01086065988773 24 15.66906562239369 18.777121731814056 48.78735825817035 16.766454387621906 25 14.940173394973424 20.148098233830982 47.63749808985682 17.274230281338777 26 15.211459754433834 20.8934683229219 47.3664878956758 16.52858402696846 27 15.346412520965547 21.265647064455134 46.96908605862436 16.418854355954952 28 14.846553365258039 19.725841521633868 48.57636798471149 16.851237128396605 29 15.42355468901028 19.37152146816827 47.57812255478659 17.626801288034862 30 16.416368868440383 19.92735012050012 46.42384374200271 17.232437269056785 31 17.26576121277062 21.801223596297913 44.02921460435641 16.903800586575056 32 18.306351985536303 22.60256318201317 42.524021776552836 16.567063055897695 33 18.313348172614347 23.632291453789264 40.3501407522374 17.70421962135899 34 17.506761446590556 24.650512838923838 39.32602784114237 18.516697873343237 35 17.638400229769513 25.0279387207656 37.34850033047778 19.9851607189871 36 19.888042595732696 26.09476519507395 35.60644974804521 18.410742461148146 37 18.666103289496697 26.804233797843334 36.8676045239555 17.662058388704473 38 18.31307200733495 27.609163532190745 35.15593212225653 18.921832338217776 39 19.268880039325936 26.91037332022469 35.260322597868374 18.560424042581005 40 19.496256119362315 25.81326072027587 36.35522587558202 18.335257284779797 41 17.608022049035906 26.808652442313672 34.77132594315046 20.81199956549996 42 18.773991858647562 26.225943702787248 34.89366716192307 20.106397276642124 43 19.34059095687587 26.14355439443398 34.563925818323746 19.9519288303664 44 18.824069829311448 26.516377521619138 34.07815109186546 20.581401557203954 45 18.658738882046126 26.410237999237786 33.665560164447214 21.26546295426887 46 19.339854516130814 26.067240722227435 35.16256008896204 19.430344672679706 47 17.426305295193067 25.820625127726444 36.99178684459075 19.76128273248974 48 17.83760745130746 24.4533308294348 36.93581734796641 20.77324437129133 49 18.309021583237136 24.08989732174912 37.75860577038146 19.842475324632286 50 17.565032320543196 24.184714067675223 37.048400726867015 21.20185288491456 51 16.862467849758726 24.379410589649694 35.72888302191095 23.02923853868063 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 386.0 1 625.5 2 865.0 3 40814.5 4 80764.0 5 55696.5 6 30629.0 7 29922.5 8 29216.0 9 29156.0 10 29096.0 11 28099.5 12 27103.0 13 25510.0 14 23917.0 15 21831.0 16 19745.0 17 18110.5 18 16476.0 19 15222.5 20 13969.0 21 12639.0 22 11309.0 23 11096.0 24 10883.0 25 10348.0 26 10841.5 27 11870.0 28 12118.5 29 12367.0 30 13937.5 31 15508.0 32 17627.5 33 19747.0 34 21015.0 35 22283.0 36 25041.5 37 27800.0 38 29129.0 39 30458.0 40 34742.5 41 39027.0 42 44717.5 43 50408.0 44 56229.5 45 62051.0 46 67092.0 47 72133.0 48 77875.0 49 83617.0 50 82849.0 51 82081.0 52 69163.5 53 56246.0 54 51007.5 55 45769.0 56 41813.0 57 37857.0 58 33967.0 59 30077.0 60 27837.5 61 25598.0 62 22294.0 63 18990.0 64 16620.0 65 14250.0 66 11766.0 67 9282.0 68 7277.5 69 5273.0 70 4777.5 71 4282.0 72 3283.5 73 2285.0 74 1861.5 75 1042.0 76 646.0 77 542.5 78 439.0 79 309.5 80 180.0 81 139.0 82 98.0 83 71.5 84 45.0 85 30.0 86 15.0 87 12.5 88 10.0 89 6.5 90 3.0 91 2.0 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1086306.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.609508514587034 #Duplication Level Percentage of deduplicated Percentage of total 1 78.64406035602585 28.00476336869599 2 9.603699318907294 6.83966025336326 3 3.4621865826111584 3.698602877777431 4 1.7283019158041324 2.4617592714641736 5 0.9929095381229405 1.7678510326001762 6 0.6150203969445392 1.3140344436984763 7 0.43496615291963925 1.0842251648164343 8 0.32529124819850147 0.9266769177956146 9 0.2527360675839015 0.8099826435514967 >10 3.2101171136106568 29.094486373944132 >50 0.6697750984961772 15.139658392266341 >100 0.056187934611225406 3.205734542819733 >500 0.0031655174426330566 0.8262560739933594 >1k 0.0013189656010971068 0.9231974414741627 >5k 0.0 0.0 >10k+ 2.6379312021942135E-4 3.903111201739208 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 41551 3.824981174733454 No Hit GCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTCTGC 3115 0.28675161510660896 Illumina PCR Primer Index 9 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTCTGC 2807 0.25839864642191057 RNA PCR Primer, Index 17 (95% over 24bp) CTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTCTGCT 1730 0.15925531111859825 RNA PCR Primer, Index 17 (96% over 25bp) TCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTCTGC 1174 0.10807267933712968 Illumina PCR Primer Index 9 (95% over 23bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 9.205509313213772E-5 0.0 0.0 0.16818465515241562 0.0 2 9.205509313213772E-5 0.0 0.0 0.9459581370258472 0.0 3 9.205509313213772E-5 0.0 0.0 1.3348909055091291 0.0 4 9.205509313213772E-5 0.0 0.0 1.7463771718097847 0.0 5 9.205509313213772E-5 0.0 0.0 2.794608517305437 0.0 6 9.205509313213772E-5 0.0 0.0 3.3256743495847396 0.0 7 9.205509313213772E-5 0.0 0.0 3.898809359425429 0.0 8 9.205509313213772E-5 0.0 0.0 4.751239521829024 0.0 9 9.205509313213772E-5 0.0 0.0 5.06542355468901 0.0 10 9.205509313213772E-5 0.0 0.0 5.749392896660794 0.0 11 9.205509313213772E-5 0.0 0.0 6.808486743146038 0.0 12 9.205509313213772E-5 0.0 0.0 7.6169145710324715 0.0 13 9.205509313213772E-5 0.0 0.0 7.933676146500157 0.0 14 9.205509313213772E-5 0.0 0.0 8.057306136576619 0.0 15 9.205509313213772E-5 0.0 0.0 8.311746413993847 0.0 16 9.205509313213772E-5 0.0 0.0 8.844653348135793 0.0 17 9.205509313213772E-5 0.0 0.0 9.526045147499875 0.0 18 9.205509313213772E-5 0.0 0.0 10.321401152161545 0.0 19 9.205509313213772E-5 0.0 0.0 10.764002039940864 0.0 20 9.205509313213772E-5 0.0 0.0 11.207247313372108 0.0 21 9.205509313213772E-5 0.0 0.0 11.747242489685227 0.0 22 9.205509313213772E-5 0.0 0.0 12.319180783315199 0.0 23 9.205509313213772E-5 0.0 0.0 12.914869290973261 0.0 24 9.205509313213772E-5 0.0 0.0 13.366215412600132 0.0 25 9.205509313213772E-5 0.0 0.0 13.797861744296727 0.0 26 9.205509313213772E-5 0.0 0.0 14.172065697878866 0.0 27 9.205509313213772E-5 0.0 0.0 14.54857102878931 0.0 28 9.205509313213772E-5 0.0 0.0 14.935846805596213 0.0 29 9.205509313213772E-5 0.0 0.0 15.339876609353166 0.0 30 9.205509313213772E-5 0.0 0.0 15.793800273587737 0.0 31 9.205509313213772E-5 0.0 0.0 16.240359530371737 0.0 32 9.205509313213772E-5 0.0 0.0 16.643468783197367 0.0 33 9.205509313213772E-5 0.0 0.0 17.01813301224517 0.0 34 9.205509313213772E-5 0.0 0.0 17.42032171413948 0.0 35 9.205509313213772E-5 0.0 0.0 17.84377514254731 0.0 36 9.205509313213772E-5 0.0 0.0 18.235653674010823 0.0 37 9.205509313213772E-5 0.0 0.0 18.63959142267464 0.0 38 9.205509313213772E-5 0.0 0.0 19.041872179662086 0.0 39 1.8411018626427543E-4 0.0 0.0 19.44691458944349 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCAATC 20 7.033116E-4 45.0 23 CCGATCC 20 7.033116E-4 45.0 42 ACGTTAC 20 7.033116E-4 45.0 38 CGCGACG 20 7.033116E-4 45.0 1 TAGCCCG 25 3.890664E-5 45.0 1 CAAATCG 25 3.890664E-5 45.0 18 TAGTACG 20 7.033116E-4 45.0 1 CCCGATC 20 7.033116E-4 45.0 41 GCCCGAT 30 2.1653923E-6 44.999996 39 CCCGATA 30 2.1653923E-6 44.999996 40 AGGTCGT 30 2.1653923E-6 44.999996 14 CGTTTTT 29695 0.0 44.621147 1 TTGCGAG 55 6.184564E-11 40.909092 1 ATCTACG 45 1.9281288E-8 40.000004 1 GTTTTTT 33355 0.0 39.839603 2 TTTAGCG 40 3.4579898E-7 39.375 1 TTAATCG 40 3.4579898E-7 39.375 20 TCTACGG 75 0.0 39.0 2 AATACGG 75 0.0 39.0 2 ACGGGTC 35 6.247974E-6 38.571426 5 >>END_MODULE