SRR2934929.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934929.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	920708
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	32143	3.4911177050704456	No Hit
GCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCTGC	5743	0.6237591071219105	TruSeq Adapter, Index 13 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCTGC	4746	0.5154728752221117	TruSeq Adapter, Index 13 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCTGCT	2710	0.2943387045621413	TruSeq Adapter, Index 16 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCTGC	2561	0.2781555064146288	TruSeq Adapter, Index 13 (95% over 23bp)
ACTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCTGC	1582	0.17182429174070388	TruSeq Adapter, Index 16 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCTG	1503	0.1632439383604791	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCC	1351	0.14673490400865422	No Hit
GCCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCTG	1026	0.11143598187481807	TruSeq Adapter, Index 13 (95% over 22bp)
ACCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCTG	953	0.10350730090321796	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGAGG	95	0.0	45.000004	2
TGCGTAG	85	0.0	45.000004	1
TATCACG	20	7.032555E-4	45.0	1
TTAGGCG	25	3.890199E-5	45.0	1
TAATACG	25	3.890199E-5	45.0	1
TCGTTAC	20	7.032555E-4	45.0	37
AGTCCCG	20	7.032555E-4	45.0	14
CGAACCG	25	3.890199E-5	45.0	2
CGAGTTA	20	7.032555E-4	45.0	13
GCGCGGC	20	7.032555E-4	45.0	3
TAGCGCG	45	3.8380676E-10	45.0	1
CCGTGAA	20	7.032555E-4	45.0	22
GTTAGCG	50	2.1827873E-11	45.0	1
CACTGCG	25	3.890199E-5	45.0	1
TAACGCG	40	6.8121153E-9	45.0	1
CGTTACC	20	7.032555E-4	45.0	38
TCGCTAT	20	7.032555E-4	45.0	14
CCATACG	20	7.032555E-4	45.0	1
GTCGTTG	20	7.032555E-4	45.0	1
TCCCGAG	20	7.032555E-4	45.0	44