##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934929.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 920708 Sequences flagged as poor quality 0 Sequence length 51 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.374512874874554 33.0 31.0 34.0 30.0 34.0 2 32.56128327330706 34.0 31.0 34.0 31.0 34.0 3 32.63755935649522 34.0 31.0 34.0 31.0 34.0 4 36.06924562401978 37.0 35.0 37.0 35.0 37.0 5 35.934813208965274 37.0 35.0 37.0 35.0 37.0 6 35.93427449310748 37.0 35.0 37.0 35.0 37.0 7 36.15680867332531 37.0 36.0 37.0 35.0 37.0 8 36.1814831629572 37.0 37.0 37.0 35.0 37.0 9 37.993257362812095 39.0 39.0 39.0 35.0 39.0 10 37.48565994864821 39.0 37.0 39.0 35.0 39.0 11 37.331469912284895 39.0 37.0 39.0 34.0 39.0 12 37.37390247505181 39.0 37.0 39.0 34.0 39.0 13 37.359104080772624 39.0 37.0 39.0 34.0 39.0 14 38.575035733370406 40.0 38.0 41.0 34.0 41.0 15 38.61896714267716 40.0 38.0 41.0 34.0 41.0 16 38.699638756261486 40.0 38.0 41.0 35.0 41.0 17 38.75004127258588 40.0 38.0 41.0 35.0 41.0 18 38.301642866142146 39.0 38.0 40.0 35.0 41.0 19 37.85902479396291 38.0 37.0 40.0 35.0 41.0 20 37.30512496904556 38.0 35.0 40.0 34.0 41.0 21 37.26318333282648 38.0 35.0 40.0 34.0 41.0 22 37.07333161002185 38.0 35.0 40.0 34.0 41.0 23 36.9155856145488 38.0 35.0 40.0 33.0 41.0 24 36.65833032839945 38.0 35.0 40.0 33.0 41.0 25 36.502175499724125 37.0 35.0 40.0 33.0 41.0 26 36.68673998705344 38.0 35.0 40.0 33.0 41.0 27 36.71820273094184 38.0 35.0 40.0 33.0 41.0 28 36.70624997284698 38.0 35.0 40.0 33.0 41.0 29 36.6075987175087 38.0 35.0 40.0 33.0 41.0 30 36.2878958366822 38.0 35.0 40.0 32.0 41.0 31 35.828592778600814 38.0 35.0 40.0 30.0 41.0 32 35.11832198699262 38.0 35.0 40.0 24.0 41.0 33 34.157187729442995 38.0 34.0 40.0 18.0 41.0 34 33.42381297870769 38.0 33.0 40.0 12.0 41.0 35 32.93643044265934 38.0 33.0 40.0 10.0 41.0 36 32.76229054162666 38.0 33.0 40.0 8.0 41.0 37 32.577858561020435 38.0 32.0 40.0 8.0 41.0 38 32.43853100005648 38.0 31.0 40.0 8.0 41.0 39 32.35635510932891 38.0 31.0 40.0 8.0 41.0 40 32.24850767018425 38.0 31.0 40.0 8.0 41.0 41 32.164399570765106 38.0 31.0 40.0 8.0 41.0 42 32.07826259791378 38.0 30.0 40.0 7.0 41.0 43 31.98257536591406 38.0 30.0 40.0 7.0 41.0 44 31.861097112222332 38.0 30.0 40.0 7.0 41.0 45 31.793051651555107 38.0 29.0 40.0 7.0 41.0 46 31.707264409563077 37.0 29.0 40.0 7.0 41.0 47 31.6545234754124 37.0 29.0 40.0 7.0 41.0 48 31.599078100765933 37.0 29.0 40.0 7.0 41.0 49 31.522371913788085 37.0 28.0 40.0 7.0 41.0 50 31.431411478992253 37.0 27.0 40.0 7.0 41.0 51 30.87232868618498 36.0 26.0 40.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 2.0 10 9.0 11 7.0 12 2.0 13 4.0 14 10.0 15 20.0 16 66.0 17 151.0 18 297.0 19 555.0 20 1004.0 21 1623.0 22 2807.0 23 5393.0 24 11012.0 25 24088.0 26 39545.0 27 44396.0 28 36958.0 29 27786.0 30 22481.0 31 20693.0 32 21812.0 33 26905.0 34 43383.0 35 62344.0 36 68285.0 37 94850.0 38 176061.0 39 188077.0 40 81.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.980849520151885 16.713116427792524 20.52941866476668 33.77661538728891 2 47.56013850210925 18.682904894928683 19.512158034903575 14.244798568058496 3 23.552744192512716 17.85245702220465 45.91184175656126 12.682957028721376 4 21.32728291705948 19.98603248804181 45.13754632304705 13.549138271851662 5 18.53769055987349 22.155667160489536 44.22335854581475 15.083283733822233 6 19.414515785677978 24.01304213713794 43.451126741594514 13.121315335589568 7 60.20236600529159 3.9158995034256248 31.491417474378412 4.390317016904382 8 60.246136668737535 3.012681545071836 31.134083770315886 5.607098015874739 9 55.96291115098381 5.393132241709641 33.266573115472006 5.377383491834545 10 26.39566507513783 25.877259674076907 38.17138549898556 9.555689751799703 11 18.479691715505894 19.02492429738853 47.3925500810246 15.102833906080972 12 16.865281935206387 17.905242487303248 50.27413685989478 14.95533871759559 13 15.77644595246267 20.49238194954318 50.792107812683284 12.93906428531087 14 13.357872419920321 23.794188819908157 47.17901875513192 15.668920005039599 15 11.878358828206121 21.83417543890137 51.618645650955564 14.668820081936945 16 13.52611251341359 21.596858070093887 48.12459542004631 16.752433996446214 17 13.725958718725154 21.03381310904217 45.703632422005676 19.536595750226997 18 14.407933894350869 20.586983060861858 48.81134952666861 16.193733518118666 19 14.980102269123327 21.137754858217804 46.81245302528054 17.06968984737832 20 15.400430972686237 21.935293274306293 47.02240015292579 15.641875600081676 21 15.642418660422198 21.73381788797317 47.4532642270948 15.170499224509834 22 14.311160541670107 20.72524622355839 45.43362282069886 19.529970414072647 23 12.692514890714538 21.72730116388692 46.38767122692536 19.192512718473175 24 15.448546118856358 19.780647067256936 47.082462626587365 17.68834418729934 25 13.089383387566958 22.23636592709089 45.379534010783004 19.294716674559144 26 12.899420880452869 22.42100644286788 45.38496461418821 19.29460806249104 27 14.318980610573604 23.083540058302958 45.889359058463704 16.708120272659734 28 11.715223501913744 21.32815181360431 48.367452004327106 18.589172680154835 29 12.191052972277856 21.30295381380416 46.09170334134166 20.414289872576322 30 14.229918714728232 24.22809403198408 43.99603348727284 17.54595376601485 31 13.712273598144037 23.92159077579428 42.288108716335685 20.078026909725992 32 13.726501779065675 25.256867541066224 39.74321934858826 21.27341133127984 33 13.890288777766674 26.080038405227278 38.84271669193707 21.186956125068967 34 13.506453729086745 23.116015066666087 39.184084421988295 24.19344678225887 35 13.197995455671071 25.32735677326579 35.0893008423952 26.385346928667936 36 15.695095513452692 26.193212180191765 35.00273702411623 23.10895528223932 37 14.9212345282109 26.006399423052695 37.8975744752951 21.17479157344131 38 14.71812996085621 28.380659231808565 34.32793024498538 22.573280562349844 39 16.54943804115963 26.66143880578859 34.695039035177274 22.094084117874505 40 17.61731189475925 24.332796065636444 34.72154037979468 23.328351659809623 41 15.809681245302528 24.241996376701408 31.976804806735686 27.971517571260378 42 16.66326348853274 23.95862749101778 33.46793988973703 25.91016913071245 43 18.187525252305832 24.610517123778656 33.92888950677088 23.273068117144632 44 16.034291002141828 25.890401734317503 34.078013876277815 23.997293387262847 45 16.925778857140376 25.100031714723887 32.690820542452116 25.283368885683625 46 18.514230353163 24.48116015066666 33.79822918884163 23.206380307328708 47 14.600068642827042 24.31096503994752 36.5316691068178 24.55729721040764 48 15.189289112291846 22.882064671969832 35.28089253053085 26.64775368520747 49 16.57354992027874 21.605329811406005 37.9056117683348 23.91550849998045 50 16.220452086872278 21.615756569944 36.636479752538264 25.527311590645457 51 15.45202170503569 21.86806240414985 33.28080129639365 29.399114594420816 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 398.0 1 475.5 2 553.0 3 25996.0 4 51439.0 5 35474.5 6 19510.0 7 19521.5 8 19533.0 9 20356.5 10 21180.0 11 21104.5 12 21029.0 13 20573.0 14 20117.0 15 19073.5 16 18030.0 17 16766.5 18 15503.0 19 14352.5 20 13202.0 21 12192.0 22 11182.0 23 10402.5 24 9623.0 25 9043.0 26 8778.5 27 9094.0 28 9436.0 29 9778.0 30 10864.0 31 11950.0 32 13159.0 33 14368.0 34 16737.5 35 19107.0 36 20647.0 37 22187.0 38 25480.0 39 28773.0 40 32479.0 41 36185.0 42 42117.0 43 48049.0 44 56462.0 45 64875.0 46 74554.5 47 84234.0 48 94365.5 49 104497.0 50 98357.5 51 92218.0 52 73422.0 53 54626.0 54 43700.5 55 32775.0 56 26552.0 57 20329.0 58 16920.5 59 13512.0 60 11696.5 61 9881.0 62 7943.0 63 6005.0 64 4806.0 65 3607.0 66 2884.0 67 2161.0 68 1513.5 69 866.0 70 851.5 71 837.0 72 586.0 73 335.0 74 318.0 75 254.5 76 208.0 77 156.5 78 105.0 79 88.0 80 71.0 81 40.0 82 9.0 83 5.5 84 2.0 85 1.5 86 1.0 87 0.5 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 920708.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.37624419319867 #Duplication Level Percentage of deduplicated Percentage of total 1 75.72133587259974 29.059004760821022 2 10.648378094617872 8.17289516041126 3 4.40352703847252 5.069724868193232 4 2.181384993193555 3.3485345271269957 5 1.320349933946473 2.5335035742801795 6 0.8414382536032957 1.9374743936267222 7 0.5865685279945166 1.5757207946453866 8 0.4253932009096485 1.3059994684988074 9 0.3374113089451396 1.1653720907062928 >10 3.159942371342275 27.424293882082107 >50 0.31011812905280184 7.524781524053475 >100 0.05811102966409555 4.1138408534613005 >500 0.0034521403760579823 0.8773500056976601 >1k 0.0020137485527004896 1.7088839484326261 >5k 2.876783646714985E-4 0.634028071312654 >10k+ 2.876783646714985E-4 3.5485920766502943 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 32143 3.4911177050704456 No Hit GCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCTGC 5743 0.6237591071219105 TruSeq Adapter, Index 13 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCTGC 4746 0.5154728752221117 TruSeq Adapter, Index 13 (95% over 23bp) CTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCTGCT 2710 0.2943387045621413 TruSeq Adapter, Index 16 (95% over 22bp) TCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCTGC 2561 0.2781555064146288 TruSeq Adapter, Index 13 (95% over 23bp) ACTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCTGC 1582 0.17182429174070388 TruSeq Adapter, Index 16 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCTG 1503 0.1632439383604791 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCC 1351 0.14673490400865422 No Hit GCCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCTG 1026 0.11143598187481807 TruSeq Adapter, Index 13 (95% over 22bp) ACCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCTG 953 0.10350730090321796 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.516724086246671E-4 0.0 0.0 0.3251845319037089 0.0 2 6.516724086246671E-4 0.0 0.0 2.0803555524661457 0.0 3 6.516724086246671E-4 0.0 0.0 2.9741242608948766 0.0 4 6.516724086246671E-4 0.0 0.0 3.908405270726441 0.0 5 6.516724086246671E-4 0.0 0.0 6.140166046129718 0.0 6 6.516724086246671E-4 0.0 0.0 7.228350356464808 0.0 7 6.516724086246671E-4 0.0 0.0 8.43915769168944 0.0 8 6.516724086246671E-4 0.0 0.0 10.244507487715975 0.0 9 6.516724086246671E-4 0.0 0.0 10.872285241357737 0.0 10 6.516724086246671E-4 0.0 0.0 12.223527980640984 0.0 11 7.602844767287783E-4 0.0 0.0 14.375784722192051 0.0 12 7.602844767287783E-4 0.0 0.0 16.112165854972478 0.0 13 7.602844767287783E-4 0.0 0.0 16.748523961994465 0.0 14 7.602844767287783E-4 0.0 0.0 16.973676779174287 0.0 15 7.602844767287783E-4 0.0 0.0 17.382818439722474 0.0 16 7.602844767287783E-4 0.0 0.0 18.33426015631449 0.0 17 7.602844767287783E-4 0.0 0.0 19.738831421036853 0.0 18 7.602844767287783E-4 0.0 0.0 21.20704935766823 0.0 19 7.602844767287783E-4 0.0 0.0 22.063238290532937 0.0 20 7.602844767287783E-4 0.0 0.0 22.806905120841787 0.0 21 7.602844767287783E-4 0.0 0.0 23.727066561819818 0.0 22 7.602844767287783E-4 0.0 0.0 24.739656872754445 0.0 23 7.602844767287783E-4 0.0 0.0 25.724225270118215 0.0 24 7.602844767287783E-4 0.0 0.0 26.460832316000296 0.0 25 7.602844767287783E-4 0.0 0.0 27.080898612806667 0.0 26 7.602844767287783E-4 0.0 0.0 27.670553530543884 0.0 27 7.602844767287783E-4 0.0 0.0 28.23490183641285 0.0 28 7.602844767287783E-4 0.0 0.0 28.840305504025164 0.0 29 7.602844767287783E-4 0.0 0.0 29.478510016204922 0.0 30 8.688965448328895E-4 0.0 0.0 30.165807183167736 0.0 31 9.775086129370006E-4 0.0 0.0 30.82301880726571 0.0 32 9.775086129370006E-4 0.0 0.0 31.411044543981372 0.0 33 9.775086129370006E-4 0.0 0.0 31.957254634476946 0.0 34 0.0010861206810411118 0.0 0.0 32.4897796043914 0.0 35 0.0010861206810411118 0.0 0.0 33.08562541001056 0.0 36 0.0010861206810411118 0.0 0.0 33.6283599143268 0.0 37 0.0010861206810411118 0.0 0.0 34.16251406526282 0.0 38 0.001194732749145223 0.0 0.0 34.67755249221251 0.0 39 0.0013033448172493343 0.0 0.0 35.19997653979329 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CACGAGG 95 0.0 45.000004 2 TGCGTAG 85 0.0 45.000004 1 TATCACG 20 7.032555E-4 45.0 1 TTAGGCG 25 3.890199E-5 45.0 1 TAATACG 25 3.890199E-5 45.0 1 TCGTTAC 20 7.032555E-4 45.0 37 AGTCCCG 20 7.032555E-4 45.0 14 CGAACCG 25 3.890199E-5 45.0 2 CGAGTTA 20 7.032555E-4 45.0 13 GCGCGGC 20 7.032555E-4 45.0 3 TAGCGCG 45 3.8380676E-10 45.0 1 CCGTGAA 20 7.032555E-4 45.0 22 GTTAGCG 50 2.1827873E-11 45.0 1 CACTGCG 25 3.890199E-5 45.0 1 TAACGCG 40 6.8121153E-9 45.0 1 CGTTACC 20 7.032555E-4 45.0 38 TCGCTAT 20 7.032555E-4 45.0 14 CCATACG 20 7.032555E-4 45.0 1 GTCGTTG 20 7.032555E-4 45.0 1 TCCCGAG 20 7.032555E-4 45.0 44 >>END_MODULE