SRR2934926.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934926.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1720062
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	61206	3.5583601056240997	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCG	5596	0.3253371099413858	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGC	5570	0.323825536521358	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTC	4226	0.24568881819376276	No Hit
GCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTCTGC	3572	0.20766693293613833	TruSeq Adapter, Index 16 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTCTGC	2505	0.14563428527576333	TruSeq Adapter, Index 16 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	1743	0.10133355658109998	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTACT	30	2.1661326E-6	45.000004	32
TATAGCG	20	7.034265E-4	45.0	1
TACGTAG	40	6.8175723E-9	45.0	1
CGTTTTT	47145	0.0	44.45116	1
TAGTACG	60	3.6379788E-12	41.250004	1
GCGTAAG	95	0.0	40.26316	1
TCTAGCG	45	1.9292202E-8	40.0	1
GTTTTTT	53375	0.0	39.50726	2
TACGTTG	40	3.459554E-7	39.375	1
TAGGGCG	495	0.0	37.272728	5
TGCGACG	55	2.750312E-9	36.81818	1
CGTACTG	55	2.750312E-9	36.81818	1
TGTAACG	55	2.750312E-9	36.81818	1
TATTGCG	80	0.0	36.5625	1
ACGGGCG	250	0.0	36.000004	5
CGAACTA	25	0.002107399	36.0	13
ACGCAGT	25	0.002107399	36.0	38
GCGAACC	25	0.002107399	36.0	33
CGCGCGA	25	0.002107399	36.0	14
CGATTCA	25	0.002107399	36.0	10