SRR2934925.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934925.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	465899
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17433	3.7417981150421014	No Hit
GCTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCCGTCTTCTGC	4039	0.866926093423682	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCCGTCTTCTGC	3876	0.8319399698217853	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCCGTCTTCTGCT	2186	0.46920040609660035	Illumina Single End Adapter 1 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCCGTCTTCTGC	1676	0.35973462059373384	Illumina Single End Adapter 1 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCCGTCTTCTG	1155	0.2479078083447271	No Hit
ACTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCCGTCTTCTGC	1129	0.24232719967203195	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCC	977	0.2097021028162756	No Hit
AGCTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCCGTCTTCTG	642	0.13779810645654958	No Hit
GCCTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCCGTCTTCTG	640	0.13736882886634227	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCCGTCTTC	606	0.13007110983281783	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	585	0.125563695135641	No Hit
ACCTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCCGTCTTCTG	533	0.11440247779025067	No Hit
GGCTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCCGTCTTCTG	510	0.10946578550286651	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGC	468	0.10045095610851278	No Hit

Adapter graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCGT	20	7.028964E-4	45.0	28
TCGCCGT	20	7.028964E-4	45.0	31
AAGTACG	25	3.8872222E-5	45.0	1
CTGTCGG	40	6.7993824E-9	45.0	2
GATACGC	20	7.028964E-4	45.0	10
TGCCCGC	20	7.028964E-4	45.0	16
ATGATCG	20	7.028964E-4	45.0	27
GTACATC	25	3.8872222E-5	45.0	25
AGTCAAT	25	3.8872222E-5	45.0	30
ACGCATT	25	3.8872222E-5	45.0	11
GACACGC	20	7.028964E-4	45.0	22
CGGCACT	25	3.8872222E-5	45.0	17
GCAGTAG	40	6.7993824E-9	45.0	1
CGCGCAT	50	2.1827873E-11	45.0	36
TTACTCC	20	7.028964E-4	45.0	20
TTACTAG	20	7.028964E-4	45.0	1
TTGTACG	20	7.028964E-4	45.0	1
TAAGTAG	25	3.8872222E-5	45.0	1
GCGTTAG	25	3.8872222E-5	45.0	1
ACGGGTG	20	7.028964E-4	45.0	5