##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934924.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1073462 Sequences flagged as poor quality 0 Sequence length 51 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.479032327180654 34.0 31.0 34.0 31.0 34.0 2 32.64506521888991 34.0 31.0 34.0 31.0 34.0 3 32.71024405148948 34.0 31.0 34.0 31.0 34.0 4 36.128902560127884 37.0 37.0 37.0 35.0 37.0 5 36.00548319362959 37.0 35.0 37.0 35.0 37.0 6 35.9930644959952 37.0 35.0 37.0 35.0 37.0 7 36.145896175179 37.0 36.0 37.0 35.0 37.0 8 36.13861692356134 37.0 37.0 37.0 35.0 37.0 9 37.898422114616075 39.0 38.0 39.0 35.0 39.0 10 37.52244886172031 39.0 37.0 39.0 35.0 39.0 11 37.434993506989535 39.0 37.0 39.0 34.0 39.0 12 37.372180850370114 39.0 37.0 39.0 35.0 39.0 13 37.29763140194995 39.0 37.0 39.0 34.0 39.0 14 38.530956848030016 40.0 38.0 41.0 34.0 41.0 15 38.58423493332787 40.0 38.0 41.0 34.0 41.0 16 38.675135216710046 40.0 38.0 41.0 35.0 41.0 17 38.689538148532506 40.0 38.0 41.0 35.0 41.0 18 38.26778777450902 39.0 38.0 41.0 35.0 41.0 19 37.835558221902595 38.0 37.0 41.0 34.0 41.0 20 37.32076030637321 38.0 35.0 41.0 34.0 41.0 21 37.25557961064295 38.0 35.0 40.0 34.0 41.0 22 37.068106742483664 38.0 35.0 40.0 34.0 41.0 23 36.908820247013864 38.0 35.0 40.0 33.0 41.0 24 36.69017254453348 38.0 35.0 40.0 33.0 41.0 25 36.499332999211894 37.0 35.0 40.0 33.0 41.0 26 36.63055236235656 38.0 35.0 40.0 33.0 41.0 27 36.70148174784016 38.0 35.0 40.0 33.0 41.0 28 36.631646951638714 38.0 35.0 40.0 33.0 41.0 29 36.53611213065763 38.0 35.0 40.0 33.0 41.0 30 36.31395056369019 38.0 35.0 40.0 32.0 41.0 31 35.81866801060494 38.0 35.0 40.0 30.0 41.0 32 35.199693142374855 38.0 35.0 40.0 25.0 41.0 33 34.375673288854195 38.0 35.0 40.0 18.0 41.0 34 33.67667882048922 38.0 34.0 40.0 15.0 41.0 35 33.2651197713566 38.0 33.0 40.0 10.0 41.0 36 33.07982583454282 38.0 33.0 40.0 10.0 41.0 37 32.84691959286868 38.0 33.0 40.0 10.0 41.0 38 32.713899513909205 38.0 32.0 40.0 10.0 41.0 39 32.648785890883886 38.0 32.0 40.0 10.0 41.0 40 32.504239553891985 37.0 31.0 40.0 9.0 41.0 41 32.35752546433875 37.0 31.0 40.0 8.0 41.0 42 32.24255725866402 37.0 31.0 40.0 8.0 41.0 43 32.14991494808386 37.0 31.0 40.0 8.0 41.0 44 32.01600149795708 37.0 30.0 40.0 8.0 41.0 45 31.998034397118854 37.0 30.0 40.0 8.0 41.0 46 31.954527500740596 37.0 30.0 40.0 8.0 41.0 47 31.952281496690148 37.0 30.0 40.0 8.0 41.0 48 31.93881944586767 36.0 30.0 40.0 8.0 41.0 49 31.845702036960787 36.0 30.0 40.0 8.0 41.0 50 31.749628771209412 36.0 29.0 40.0 8.0 41.0 51 31.155390689190675 35.0 27.0 40.0 8.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 7.0 10 9.0 11 14.0 12 16.0 13 24.0 14 26.0 15 53.0 16 129.0 17 215.0 18 331.0 19 724.0 20 1235.0 21 1960.0 22 3182.0 23 5344.0 24 10285.0 25 21047.0 26 38469.0 27 49671.0 28 45596.0 29 36511.0 30 29009.0 31 25764.0 32 27048.0 33 33432.0 34 57669.0 35 80111.0 36 78400.0 37 105005.0 38 190448.0 39 231559.0 40 166.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.69917705517289 16.48898610290816 18.92009218770669 33.89174465421226 2 48.45909776033059 18.93164359800347 18.54066562207139 14.068593019594545 3 24.41250831422072 18.6482614195938 43.21727271202893 13.721957554156553 4 23.322204232660308 18.93574248552813 42.808967620651686 14.933085661159872 5 19.066906886317355 22.738112760395804 42.152586677497666 16.042393675789178 6 20.178450657778292 25.611619228254007 42.23978119393141 11.970148920036294 7 59.403220607715966 5.253003832459836 30.674770043094213 4.669005516729982 8 59.08341422425759 4.791226890192666 30.667969616064656 5.457389269485087 9 53.87531184149975 6.738384777476986 32.70148361097086 6.6848197700524095 10 30.26208659458835 19.717698437392286 38.05034551758702 11.96986945043234 11 23.41452235849988 19.2678455315605 41.67338946325068 15.644242646688939 12 21.429915544285684 16.775069820822722 46.36279626106933 15.432218373822268 13 18.367860250292978 20.470775863514497 46.87441194937501 14.286951936817513 14 14.649144543542295 23.08949920910102 45.1156165751559 17.145739672200786 15 13.861506043064404 19.967451106792787 50.7164669080042 15.454575942138613 16 15.307947556597254 19.944255129664583 47.45990076965929 17.287896544078876 17 15.779692248072125 19.384011730270842 44.64452397942358 20.191772042233445 18 16.56034400845116 19.98328771768353 46.29106572938772 17.165302544477587 19 17.508677531202782 20.769528870141656 44.05782412418884 17.663969474466725 20 18.87202341582655 20.833154783308586 44.31363196834168 15.981189832523182 21 17.360744954176297 21.232610003893942 45.49206213168235 15.914582910247404 22 16.46420646469088 20.237046118074044 43.175818054109044 20.122929363126037 23 15.795808328566824 20.83660157509069 44.791431834568904 18.57615826177359 24 17.430332885560922 19.06588216443619 45.268859074657506 18.23492587534538 25 15.440416148871595 20.59812084638301 44.03919281725855 19.92227018748684 26 14.352720450281426 21.212488192409232 44.954362613674256 19.48042874363508 27 16.072017453808332 20.904046906178326 45.184272941194 17.839662698819332 28 13.356318155649666 20.334208383715495 45.92784840078177 20.38162505985307 29 14.468141396714557 18.786692030085835 45.99082221820614 20.75434435499347 30 15.538789449463511 19.56212702452439 45.643814126629536 19.255269399382556 31 15.910577179257393 20.80558044905176 41.55517382077801 21.72866855091284 32 16.207094429052916 21.08840368825352 42.83207044124524 19.872431441448324 33 16.472031613601597 21.37756157181158 41.01067387574036 21.13973293884646 34 15.103562119572 21.139360312707854 39.60484861131554 24.152228956404606 35 15.77810858698305 21.843716871207363 39.106181681326404 23.271992860483184 36 17.306807320613117 23.43576204840041 36.88206941652336 22.375361214463112 37 16.802830468148848 24.44129368342801 37.88536529471933 20.87051055370381 38 16.27621657776428 25.26302747558833 36.452058852572335 22.008697094075057 39 17.6104976235768 23.362913638302988 37.16694209948746 21.85964663863276 40 18.232131179305835 23.111949933952015 37.13228786859712 21.52363101814503 41 15.802515599061728 24.32913321570768 34.63671746181979 25.231633723410795 42 16.6180079034004 23.774758677996985 35.21838686418336 24.388846554419253 43 18.832897671272946 22.772021739008927 35.68491478971775 22.71016580000037 44 17.480916883876656 24.00988577145721 34.912367647853394 23.596829696812744 45 17.251565495564815 23.058757552666048 34.694381356769036 24.9952955950001 46 17.796903849414324 23.15964607969355 36.86325179652377 22.18019827436835 47 15.99665381727532 22.797826099107375 38.65791243658369 22.547607647033615 48 16.133221297074325 21.164512577063743 38.370897153322616 24.331368972539316 49 16.724113196368386 20.67721074430208 39.54234057656442 23.056335482765107 50 16.496811251818883 20.87507522390173 38.5809651389616 24.047148385317783 51 15.865303103416794 21.268475269734747 35.574151670017194 27.29206995683126 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 423.0 1 767.0 2 1111.0 3 36304.5 4 71498.0 5 50091.5 6 28685.0 7 27092.0 8 25499.0 9 24994.5 10 24490.0 11 23606.5 12 22723.0 13 21400.0 14 20077.0 15 18274.0 16 16471.0 17 15114.0 18 13757.0 19 12392.0 20 11027.0 21 10393.0 22 9759.0 23 9109.0 24 8459.0 25 9142.0 26 10311.5 27 10798.0 28 11548.5 29 12299.0 30 13662.0 31 15025.0 32 14313.0 33 13601.0 34 16856.0 35 20111.0 36 21783.5 37 23456.0 38 24636.0 39 25816.0 40 29438.5 41 33061.0 42 40671.5 43 48282.0 44 54486.0 45 60690.0 46 69630.5 47 78571.0 48 89430.5 49 100290.0 50 98816.5 51 97343.0 52 80050.5 53 62758.0 54 53799.5 55 44841.0 56 39899.0 57 34957.0 58 32174.0 59 29391.0 60 28636.5 61 27882.0 62 24863.0 63 21844.0 64 19268.0 65 16692.0 66 14028.0 67 11364.0 68 9805.5 69 8247.0 70 6607.5 71 4968.0 72 4240.5 73 3513.0 74 2628.5 75 1357.0 76 970.0 77 809.5 78 649.0 79 484.0 80 319.0 81 212.5 82 106.0 83 63.0 84 20.0 85 14.0 86 8.0 87 19.5 88 31.0 89 19.0 90 7.0 91 4.5 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1073462.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.33004144540797 #Duplication Level Percentage of deduplicated Percentage of total 1 75.94241788978596 24.552215178412716 2 10.324189442529178 6.675629451344234 3 4.134008981031981 4.009580450773581 4 2.100879620490214 2.7168610080904636 5 1.213311601094862 1.9613207174795595 6 0.8027976054623335 1.557268791412291 7 0.5535433658337123 1.2527255971464182 8 0.41936895718133427 1.0846572613272047 9 0.3193411348000696 0.9291880910978878 >10 3.2425420830261587 25.626073512389265 >50 0.8513082850375225 17.941911658474922 >100 0.088340397914354 5.087955603508373 >500 0.005889359860919 1.40355754551008 >1k 0.00147233996522975 1.1487979991636799 >5k 2.9446799304595E-4 0.5481709521160578 >10k+ 2.9446799304595E-4 3.504086181753341 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 36807 3.428812570915412 No Hit GCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTGC 5758 0.5363953265229696 RNA PCR Primer, Index 35 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTGC 4438 0.4134287007830738 RNA PCR Primer, Index 10 (95% over 24bp) CTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTGCT 2721 0.25347893078655787 TruSeq Adapter, Index 10 (96% over 25bp) TCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTGC 1987 0.18510203435240372 RNA PCR Primer, Index 35 (95% over 23bp) CGCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTG 1550 0.1443926287097261 TruSeq Adapter, Index 10 (95% over 23bp) ACTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTGC 1371 0.127717609007119 TruSeq Adapter, Index 10 (95% over 24bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.7946960395430857E-4 0.0 0.0 0.27043342009311927 0.0 2 2.7946960395430857E-4 0.0 0.0 1.6164521892717207 0.0 3 2.7946960395430857E-4 0.0 0.0 2.3143809468802807 0.0 4 2.7946960395430857E-4 0.0 0.0 2.994423649835765 0.0 5 2.7946960395430857E-4 0.0 0.0 4.841717731973745 0.0 6 2.7946960395430857E-4 0.0 0.0 5.774866739577181 0.0 7 2.7946960395430857E-4 0.0 0.0 6.7089473125271315 0.0 8 2.7946960395430857E-4 0.0 0.0 8.084217233586285 0.0 9 2.7946960395430857E-4 0.0 0.0 8.594901356545458 0.0 10 2.7946960395430857E-4 0.0 0.0 9.725542217609938 0.0 11 3.7262613860574475E-4 0.0 0.0 11.415029130048385 0.0 12 4.65782673257181E-4 0.0 0.0 12.735802478336447 0.0 13 4.65782673257181E-4 0.0 0.0 13.242853496444216 0.0 14 4.65782673257181E-4 0.0 0.0 13.4527351690139 0.0 15 4.65782673257181E-4 0.0 0.0 13.847998345539944 0.0 16 4.65782673257181E-4 0.0 0.0 14.686872940076128 0.0 17 4.65782673257181E-4 0.0 0.0 15.651974639065006 0.0 18 4.65782673257181E-4 0.0 0.0 16.749358617258924 0.0 19 4.65782673257181E-4 0.0 0.0 17.328047010513647 0.0 20 4.65782673257181E-4 0.0 0.0 17.86593284159104 0.0 21 4.65782673257181E-4 0.0 0.0 18.56255740771448 0.0 22 4.65782673257181E-4 0.0 0.0 19.242972736808568 0.0 23 4.65782673257181E-4 0.0 0.0 19.893205348675593 0.0 24 4.65782673257181E-4 0.0 0.0 20.411435150941532 0.0 25 4.65782673257181E-4 0.0 0.0 20.920628769346283 0.0 26 5.589392079086171E-4 0.0 0.0 21.378120511019485 0.0 27 5.589392079086171E-4 0.0 0.0 21.807292666158652 0.0 28 5.589392079086171E-4 0.0 0.0 22.222491341100103 0.0 29 5.589392079086171E-4 0.0 0.0 22.643465721189944 0.0 30 5.589392079086171E-4 0.0 0.0 23.118843517516222 0.0 31 6.520957425600534E-4 0.0 0.0 23.5777326072092 0.0 32 6.520957425600534E-4 0.0 0.0 24.023952408189576 0.0 33 6.520957425600534E-4 0.0 0.0 24.43533166521032 0.0 34 7.452522772114895E-4 0.0 0.0 24.84270519124105 0.0 35 7.452522772114895E-4 0.0 0.0 25.269921059152537 0.0 36 7.452522772114895E-4 0.0 0.0 25.67887824627234 0.0 37 7.452522772114895E-4 0.0 0.0 26.10022525250079 0.0 38 7.452522772114895E-4 0.0 0.0 26.49558158556148 0.0 39 7.452522772114895E-4 0.0 0.0 26.868673506840484 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCCCG 30 2.1653668E-6 45.000004 24 TAATACG 30 2.1653668E-6 45.000004 1 TGTTACG 30 2.1653668E-6 45.000004 1 GCGATAT 65 0.0 45.000004 9 CCGACGA 35 1.211829E-7 45.000004 29 GACGATA 30 2.1653668E-6 45.000004 9 TAGTGCG 30 2.1653668E-6 45.000004 1 CGCCCGC 30 2.1653668E-6 45.000004 25 CTATGCG 25 3.890633E-5 45.0 1 ACGTTAG 20 7.033079E-4 45.0 1 CGTTGTA 20 7.033079E-4 45.0 13 TAAACGC 25 3.890633E-5 45.0 39 GCAAACG 25 3.890633E-5 45.0 1 TCGATCA 20 7.033079E-4 45.0 17 GACCCGT 20 7.033079E-4 45.0 17 ACGATTG 20 7.033079E-4 45.0 1 CGTAGCG 25 3.890633E-5 45.0 1 GTCGTAC 20 7.033079E-4 45.0 13 GAACGAT 20 7.033079E-4 45.0 40 CGAGATA 25 3.890633E-5 45.0 19 >>END_MODULE