SRR2934923.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934923.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1736815
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	63290	3.6440265658691335	No Hit
CCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTTCTGC	3978	0.22903993804751802	No Hit
CGCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTTCTG	3695	0.2127457443654045	No Hit
GCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTTCTGC	2956	0.1701965954923236	No Hit
CTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTTCTGCT	2639	0.15194479550211162	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTT	2374	0.13668698163016788	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCT	2348	0.13518998857103376	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTTC	2232	0.12851109646105083	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	2105	0.12119886113374193	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	2053	0.11820487501547373	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCC	1979	0.11394420246255359	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTATCG	20	7.034283E-4	45.000004	2
CTATCGT	20	7.034283E-4	45.000004	2
CTGCGAT	20	7.034283E-4	45.000004	19
CGTAGCG	20	7.034283E-4	45.000004	2
CTACGAC	20	7.034283E-4	45.000004	25
TTGCGTC	20	7.034283E-4	45.000004	11
CGTTTCG	25	3.8916332E-5	45.0	39
CGTTTTT	55000	0.0	44.607273	1
ACCGGTA	75	0.0	42.0	41
GCCCTCG	340	0.0	41.02941	13
CGTGTAC	345	0.0	39.782608	18
CCGGTAT	85	0.0	39.705883	42
ACTAGCG	40	3.4595905E-7	39.375004	1
CCGCCCG	80	0.0	39.375004	29
CGCCCCG	80	0.0	39.375004	25
GTTTTTT	62905	0.0	39.033863	2
AGGGTCG	180	0.0	38.75	6
AAGTACG	35	6.250135E-6	38.571426	1
CGGTAAC	35	6.250135E-6	38.571426	23
TACGTCG	35	6.250135E-6	38.571426	1