FastQCFastQC Report
Sat 14 Jan 2017
SRR2934922.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934922.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences988931
Sequences flagged as poor quality0
Sequence length51
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT351133.550601609212372No Hit
CCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTGC31400.3175145687616224TruSeq Adapter, Index 13 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTGC29980.30315562966475923TruSeq Adapter, Index 13 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTGCT16770.16957704834816584TruSeq Adapter, Index 19 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTGC13980.14136476660151215TruSeq Adapter, Index 13 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTG10780.10900659398886273No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCC10730.10850099754179009No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTAGGCG253.8904087E-545.0000041
TTGTGCG600.045.0000041
CGTTCGG253.8904087E-545.0000042
ACGATAG302.1651922E-645.0000041
GTTCGTA253.8904087E-545.00000410
ACGTCTA253.8904087E-545.00000428
ATCGCAC253.8904087E-545.00000412
ACCGGTG207.03281E-445.015
GCGCGTG351.2117016E-745.01
CGGCCAC207.03281E-445.041
CTGCGTA207.03281E-445.02
TACGCCG207.03281E-445.01
GTATGCG551.8189894E-1245.01
GAACGAT207.03281E-445.044
CTCGCGA207.03281E-445.020
ACGAGGC207.03281E-445.018
CGTTTTT280150.044.670711
CGGGAAC2100.042.8571436
ACGGGTC1050.040.7142875
GCGTAAG950.040.2631571