Basic Statistics
Measure | Value |
---|---|
Filename | SRR2934922.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 988931 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 37 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 35113 | 3.550601609212372 | No Hit |
CCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTGC | 3140 | 0.3175145687616224 | TruSeq Adapter, Index 13 (95% over 21bp) |
GCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTGC | 2998 | 0.30315562966475923 | TruSeq Adapter, Index 13 (95% over 21bp) |
CTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTGCT | 1677 | 0.16957704834816584 | TruSeq Adapter, Index 19 (95% over 22bp) |
TCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTGC | 1398 | 0.14136476660151215 | TruSeq Adapter, Index 13 (95% over 21bp) |
CGCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTG | 1078 | 0.10900659398886273 | No Hit |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCC | 1073 | 0.10850099754179009 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTAGGCG | 25 | 3.8904087E-5 | 45.000004 | 1 |
TTGTGCG | 60 | 0.0 | 45.000004 | 1 |
CGTTCGG | 25 | 3.8904087E-5 | 45.000004 | 2 |
ACGATAG | 30 | 2.1651922E-6 | 45.000004 | 1 |
GTTCGTA | 25 | 3.8904087E-5 | 45.000004 | 10 |
ACGTCTA | 25 | 3.8904087E-5 | 45.000004 | 28 |
ATCGCAC | 25 | 3.8904087E-5 | 45.000004 | 12 |
ACCGGTG | 20 | 7.03281E-4 | 45.0 | 15 |
GCGCGTG | 35 | 1.2117016E-7 | 45.0 | 1 |
CGGCCAC | 20 | 7.03281E-4 | 45.0 | 41 |
CTGCGTA | 20 | 7.03281E-4 | 45.0 | 2 |
TACGCCG | 20 | 7.03281E-4 | 45.0 | 1 |
GTATGCG | 55 | 1.8189894E-12 | 45.0 | 1 |
GAACGAT | 20 | 7.03281E-4 | 45.0 | 44 |
CTCGCGA | 20 | 7.03281E-4 | 45.0 | 20 |
ACGAGGC | 20 | 7.03281E-4 | 45.0 | 18 |
CGTTTTT | 28015 | 0.0 | 44.67071 | 1 |
CGGGAAC | 210 | 0.0 | 42.857143 | 6 |
ACGGGTC | 105 | 0.0 | 40.714287 | 5 |
GCGTAAG | 95 | 0.0 | 40.263157 | 1 |