SRR2934922.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934922.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	988931
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	35113	3.550601609212372	No Hit
CCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTGC	3140	0.3175145687616224	TruSeq Adapter, Index 13 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTGC	2998	0.30315562966475923	TruSeq Adapter, Index 13 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTGCT	1677	0.16957704834816584	TruSeq Adapter, Index 19 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTGC	1398	0.14136476660151215	TruSeq Adapter, Index 13 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTG	1078	0.10900659398886273	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCC	1073	0.10850099754179009	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGGCG	25	3.8904087E-5	45.000004	1
TTGTGCG	60	0.0	45.000004	1
CGTTCGG	25	3.8904087E-5	45.000004	2
ACGATAG	30	2.1651922E-6	45.000004	1
GTTCGTA	25	3.8904087E-5	45.000004	10
ACGTCTA	25	3.8904087E-5	45.000004	28
ATCGCAC	25	3.8904087E-5	45.000004	12
ACCGGTG	20	7.03281E-4	45.0	15
GCGCGTG	35	1.2117016E-7	45.0	1
CGGCCAC	20	7.03281E-4	45.0	41
CTGCGTA	20	7.03281E-4	45.0	2
TACGCCG	20	7.03281E-4	45.0	1
GTATGCG	55	1.8189894E-12	45.0	1
GAACGAT	20	7.03281E-4	45.0	44
CTCGCGA	20	7.03281E-4	45.0	20
ACGAGGC	20	7.03281E-4	45.0	18
CGTTTTT	28015	0.0	44.67071	1
CGGGAAC	210	0.0	42.857143	6
ACGGGTC	105	0.0	40.714287	5
GCGTAAG	95	0.0	40.263157	1