##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934918.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1395723 Sequences flagged as poor quality 0 Sequence length 51 %GC 37 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.73148898456212 34.0 31.0 34.0 31.0 34.0 2 32.87638306454791 34.0 31.0 34.0 31.0 34.0 3 32.916922627197515 34.0 33.0 34.0 31.0 34.0 4 36.28322596962291 37.0 37.0 37.0 35.0 37.0 5 36.182469587446796 37.0 37.0 37.0 35.0 37.0 6 36.185466600464416 37.0 37.0 37.0 35.0 37.0 7 36.317663318581126 37.0 37.0 37.0 35.0 37.0 8 36.345392316383695 37.0 37.0 37.0 35.0 37.0 9 38.126790917682094 39.0 39.0 39.0 37.0 39.0 10 37.76302389514252 39.0 38.0 39.0 35.0 39.0 11 37.58749551307817 39.0 37.0 39.0 35.0 39.0 12 37.60572979022342 39.0 37.0 39.0 35.0 39.0 13 37.636152732311494 39.0 37.0 39.0 35.0 39.0 14 39.020137233534165 40.0 38.0 41.0 35.0 41.0 15 39.066654343304506 41.0 39.0 41.0 35.0 41.0 16 39.12013200326999 41.0 39.0 41.0 35.0 41.0 17 39.12882785481073 41.0 39.0 41.0 35.0 41.0 18 38.58438887945531 39.0 38.0 41.0 35.0 41.0 19 38.05459750967778 39.0 37.0 41.0 35.0 41.0 20 37.467426559568054 38.0 35.0 41.0 35.0 41.0 21 37.41730629931584 38.0 35.0 41.0 35.0 41.0 22 37.22957134044506 38.0 35.0 41.0 34.0 41.0 23 37.13025077325515 38.0 35.0 41.0 34.0 41.0 24 36.93053134468659 38.0 35.0 40.0 34.0 41.0 25 36.78827389102279 38.0 35.0 40.0 33.0 41.0 26 36.88471852939301 38.0 35.0 40.0 34.0 41.0 27 36.89505439116501 38.0 35.0 40.0 34.0 41.0 28 36.824927295745645 38.0 35.0 40.0 33.0 41.0 29 36.68188028713434 38.0 35.0 41.0 33.0 41.0 30 36.3626314103873 38.0 35.0 41.0 33.0 41.0 31 35.82218964651295 38.0 35.0 41.0 31.0 41.0 32 35.025169750731344 38.0 35.0 41.0 22.0 41.0 33 34.00753086393217 38.0 34.0 41.0 15.0 41.0 34 33.164019651463796 38.0 33.0 41.0 10.0 41.0 35 32.6318589003692 38.0 32.0 41.0 8.0 41.0 36 32.3657874807537 38.0 31.0 41.0 8.0 41.0 37 32.11706262632342 38.0 30.0 41.0 7.0 41.0 38 31.9781790512874 38.0 30.0 41.0 7.0 41.0 39 31.88420338419586 38.0 29.0 41.0 7.0 41.0 40 31.75068190464727 38.0 29.0 41.0 7.0 41.0 41 31.602218348483188 37.0 27.0 41.0 7.0 41.0 42 31.479336515913257 37.0 26.0 41.0 7.0 41.0 43 31.367447552272193 37.0 25.0 41.0 7.0 41.0 44 31.262677479700486 37.0 24.0 40.0 7.0 41.0 45 31.231535197170214 37.0 24.0 40.0 7.0 41.0 46 31.192418552965023 37.0 24.0 40.0 7.0 41.0 47 31.182291185285333 36.0 24.0 40.0 7.0 41.0 48 31.11925073958085 36.0 24.0 40.0 7.0 41.0 49 30.999873184005708 36.0 24.0 40.0 7.0 41.0 50 30.92233201000485 36.0 24.0 40.0 7.0 41.0 51 30.420005258923155 35.0 24.0 40.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 7.0 10 12.0 11 19.0 12 13.0 13 22.0 14 40.0 15 60.0 16 122.0 17 253.0 18 447.0 19 929.0 20 1616.0 21 2493.0 22 4116.0 23 7139.0 24 14237.0 25 31587.0 26 58393.0 27 75068.0 28 70434.0 29 55119.0 30 41492.0 31 34573.0 32 31774.0 33 35615.0 34 59769.0 35 80348.0 36 86692.0 37 113399.0 38 224445.0 39 365236.0 40 251.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.192413537643212 15.339290102692296 17.902907668641987 38.5653886910225 2 51.630731885911466 17.42100689033569 18.598891040700767 12.349370183052082 3 22.9909516429836 17.723789032637566 47.59139170164854 11.693867622730298 4 20.864025311612693 18.647897899511577 47.370001067547065 13.118075721328658 5 18.818562135896595 21.760478261087624 45.87808612453904 13.542873478476746 6 19.813888572445965 24.90716281095891 44.54164615758284 10.737302459012282 7 59.62357860406399 4.06147924767307 33.24792956768643 3.0670125805765185 8 60.99799172185312 3.565392273395222 32.67238556647701 2.7642304382746437 9 56.31432598015509 5.684437384781937 34.156920821681666 3.8443158133813085 10 28.023683782527048 24.532804861709668 38.57541933463875 8.868092021124536 11 20.33297437958678 18.224031559270713 48.337026759607745 13.10596730153476 12 19.511321372507297 16.777254512535798 50.02418101586059 13.68724309909631 13 17.25249207758273 17.58507956091574 50.82326507480352 14.339163286698007 14 14.548660443368778 20.00690681460433 49.32024477636322 16.124187965663676 15 13.911284689010643 19.828074768417515 52.14057517143444 14.120065371137397 16 15.80370890212456 18.87029159797467 51.28166548806604 14.044334011834728 17 16.442589253025133 18.16907796174456 48.65686099605724 16.731471789173067 18 16.11021671205533 19.339797366669462 48.92059527571015 15.629390645565058 19 17.242174844148874 19.902158236268942 48.17746787865501 14.678199040927176 20 19.060014057230553 19.28663495550335 47.80633406485384 13.847016922412255 21 18.3855249214923 18.789759859227082 48.40150946856934 14.42320575071128 22 17.29669855694862 18.73745721751379 47.499539665105466 16.46630456043212 23 16.564174983144937 19.183247678801596 48.47609446860158 15.776482869451891 24 16.151270703427542 18.179108605360806 49.61063190905359 16.058988782158064 25 16.249929248138777 19.16669711683479 48.1891464137225 16.394227221303943 26 15.453281202645512 20.86681956233436 48.085400899748734 15.594498335271398 27 15.884527230689757 21.08147533572206 47.91996692753504 15.114030506053137 28 14.97847352232499 20.32115254961049 48.99861935355368 15.701754574510845 29 16.148977984886688 19.245151079404724 48.58392388747624 16.02194704823235 30 16.454267788092622 19.999742069164153 47.19647093298598 16.349519209757236 31 16.768585170553184 21.32364373160004 45.16992268523195 16.737848412614824 32 17.977707611037435 22.17889939479395 44.12351161369412 15.719881380474494 33 18.1384128512606 23.938704169810197 41.19764451828909 16.725238460640114 34 17.757105098934385 24.73750163893552 39.89194130927125 17.613451952858842 35 18.300192803299794 25.156209362459457 37.87105321041496 18.672544623825786 36 18.402147130913512 27.59487376793246 36.462750846693794 17.54022825446023 37 19.433870474298985 27.93591565088488 36.1108185506723 16.519395324143833 38 19.33943912939745 26.978992249894855 35.00193089889613 18.679637721811563 39 19.215847270554402 27.14148867647807 35.35551108636886 18.287152966598676 40 19.52206849066756 26.926044781091953 35.99374661017981 17.558140118060674 41 17.961085401616224 28.05843279791191 35.04441783935638 18.936063961115494 42 18.846647938022084 28.15752122734955 34.404821013911786 18.591009820716575 43 19.259767160102683 27.270812331673262 34.753529174485195 18.715891333738856 44 18.583630132913193 27.182900905122292 34.67220931373919 19.56125964822533 45 18.441624878288888 26.417634444657 34.921255865239736 20.21948481181438 46 18.169292904107763 26.864284675397627 35.579910913555196 19.386511506939414 47 18.002139392988436 26.490499905783597 36.98183665383461 18.525524047393358 48 18.05128954670805 24.958247445947368 37.31657356079967 19.67388944654491 49 18.125659604377088 24.410932541772258 37.79130959366579 19.672098260184864 50 17.174038115012795 24.428629463009493 37.86582294624363 20.531509475734083 51 16.996495723005207 24.382345207465953 36.7304257363388 21.890733333190038 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 467.0 1 821.5 2 1176.0 3 57439.0 4 113702.0 5 80151.5 6 46601.0 7 44445.0 8 42289.0 9 40384.5 10 38480.0 11 36675.0 12 34870.0 13 32701.5 14 30533.0 15 27845.5 16 25158.0 17 23050.0 18 20942.0 19 19582.5 20 18223.0 21 17082.5 22 15942.0 23 14754.0 24 13566.0 25 14561.5 26 15843.5 27 16130.0 28 18130.5 29 20131.0 30 21573.5 31 23016.0 32 24628.5 33 26241.0 34 29278.0 35 32315.0 36 35622.0 37 38929.0 38 41396.0 39 43863.0 40 48349.5 41 52836.0 42 58118.5 43 63401.0 44 64550.0 45 65699.0 46 72335.0 47 78971.0 48 83521.5 49 88072.0 50 85832.0 51 83592.0 52 74411.0 53 65230.0 54 58779.0 55 52328.0 56 48630.0 57 44932.0 58 44166.0 59 43400.0 60 42849.5 61 42299.0 62 38515.5 63 34732.0 64 29025.5 65 23319.0 66 18987.5 67 14656.0 68 11907.5 69 9159.0 70 7620.0 71 6081.0 72 5090.0 73 4099.0 74 3267.0 75 1808.5 76 1182.0 77 886.5 78 591.0 79 492.0 80 393.0 81 249.0 82 105.0 83 74.0 84 43.0 85 31.5 86 20.0 87 13.0 88 6.0 89 6.5 90 7.0 91 4.0 92 1.0 93 1.0 94 1.0 95 1.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1395723.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.3336004441722 #Duplication Level Percentage of deduplicated Percentage of total 1 79.4658853665298 26.48884071750295 2 8.519220287278376 5.679525703040465 3 2.883381766512696 2.8834048719883687 4 1.4221773266866249 1.8962516307413164 5 0.8370599282819515 1.3951110598589005 6 0.5958175501199545 1.1916446491994466 7 0.43299612908111185 1.0103323972464096 8 0.33838209864762564 0.9023594939024332 9 0.2832839225389937 0.8498585777555379 >10 4.706162622649375 39.223302022968376 >50 0.44301464516407874 9.007753220634465 >100 0.06801114965701167 4.080189741566189 >500 0.00285208043238887 0.6937192764315601 >1k 0.0015357356174401607 0.7996127523194894 >5k 0.0 0.0 >10k+ 2.1939080249145154E-4 3.8980938848441324 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 53303 3.8190242619774843 No Hit CCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCTGC 2478 0.17754239200758318 Illumina Single End Adapter 1 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCTGC 2128 0.15246578296696406 Illumina Single End Adapter 1 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 1541 0.11040872723312577 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.09923172434644983 0.0 2 0.0 0.0 0.0 0.5549811817961013 0.0 3 0.0 0.0 0.0 0.8093296449223807 0.0 4 0.0 0.0 0.0 1.0536474644324125 0.0 5 0.0 0.0 0.0 1.698474554048332 0.0 6 0.0 0.0 0.0 2.051123324613838 0.0 7 0.0 0.0 0.0 2.434580500572105 0.0 8 0.0 0.0 0.0 3.0276781281099474 0.0 9 0.0 0.0 0.0 3.2582396363748396 0.0 10 0.0 0.0 0.0 3.7528220141102495 0.0 11 0.0 0.0 0.0 4.482837927009872 0.0 12 0.0 0.0 0.0 5.08102252381024 0.0 13 0.0 0.0 0.0 5.307070242447821 0.0 14 0.0 0.0 0.0 5.403937600799012 0.0 15 0.0 0.0 0.0 5.574673484638428 0.0 16 0.0 0.0 0.0 5.946738715346813 0.0 17 0.0 0.0 0.0 6.42054333130571 0.0 18 0.0 0.0 0.0 6.94142032480657 0.0 19 0.0 0.0 0.0 7.25330169381747 0.0 20 0.0 0.0 0.0 7.564179998466744 0.0 21 0.0 0.0 0.0 7.940973961165647 0.0 22 0.0 0.0 0.0 8.36641654540335 0.0 23 0.0 0.0 0.0 8.775451862583049 0.0 24 0.0 0.0 0.0 9.09428303467092 0.0 25 0.0 0.0 0.0 9.371415388296962 0.0 26 0.0 0.0 0.0 9.637370739036328 0.0 27 7.164745440176883E-5 0.0 0.0 9.899743717055605 0.0 28 7.164745440176883E-5 0.0 0.0 10.169639677787067 0.0 29 1.4329490880353766E-4 0.0 0.0 10.45572796321333 0.0 30 1.4329490880353766E-4 0.0 0.0 10.781652233286977 0.0 31 1.4329490880353766E-4 0.0 0.0 11.106716733907803 0.0 32 1.4329490880353766E-4 0.0 0.0 11.3942379684221 0.0 33 1.4329490880353766E-4 0.0 0.0 11.671441969502544 0.0 34 1.4329490880353766E-4 0.0 0.0 11.94749961131256 0.0 35 1.4329490880353766E-4 0.0 0.0 12.26059898704829 0.0 36 1.4329490880353766E-4 0.0 0.0 12.572193766241583 0.0 37 1.4329490880353766E-4 0.0 0.0 12.882212301438036 0.0 38 1.4329490880353766E-4 0.0 0.0 13.177543108482126 0.0 39 1.4329490880353766E-4 0.0 0.0 13.462341739729158 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTATTG 25 3.891236E-5 45.000004 1 CACTCCG 25 3.891236E-5 45.000004 11 GTATACG 25 3.891236E-5 45.000004 1 ATTAGCG 40 6.8175723E-9 45.0 1 CAACGCG 20 7.033807E-4 45.0 1 ACGGCTA 20 7.033807E-4 45.0 34 TCGTAAG 20 7.033807E-4 45.0 1 CGTAATG 40 6.8175723E-9 45.0 1 CGTTTTT 39970 0.0 44.560917 1 ACGGGTC 90 0.0 40.000004 5 GTTTTTT 44840 0.0 39.90187 2 TAACGCG 40 3.4589357E-7 39.375 1 GTTACGG 70 0.0 38.57143 2 GTTAACG 35 6.249251E-6 38.57143 1 TCAACGG 35 6.249251E-6 38.57143 2 CGAATAT 135 0.0 38.333332 14 CTACGAA 130 0.0 38.07692 11 TACGGGT 90 0.0 37.500004 4 GTAAGCG 90 0.0 37.500004 1 TAAGCGG 180 0.0 37.500004 2 >>END_MODULE