##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934916.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 378000 Sequences flagged as poor quality 0 Sequence length 51 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.468195767195766 34.0 31.0 34.0 30.0 34.0 2 32.63538888888889 34.0 31.0 34.0 31.0 34.0 3 32.70089417989418 34.0 31.0 34.0 31.0 34.0 4 36.12712433862434 37.0 37.0 37.0 35.0 37.0 5 36.0035 37.0 35.0 37.0 35.0 37.0 6 35.98442857142857 37.0 35.0 37.0 35.0 37.0 7 36.16006349206349 37.0 36.0 37.0 35.0 37.0 8 36.176486772486776 37.0 37.0 37.0 35.0 37.0 9 37.98443650793651 39.0 39.0 39.0 35.0 39.0 10 37.56715873015873 39.0 37.0 39.0 35.0 39.0 11 37.40879894179894 39.0 37.0 39.0 34.0 39.0 12 37.20984126984127 39.0 37.0 39.0 34.0 39.0 13 37.04730423280423 39.0 37.0 39.0 33.0 39.0 14 38.21366666666667 40.0 37.0 41.0 33.0 41.0 15 38.29123544973545 40.0 37.0 41.0 33.0 41.0 16 38.44856878306879 40.0 37.0 41.0 34.0 41.0 17 38.48407407407407 40.0 37.0 41.0 34.0 41.0 18 38.048084656084654 39.0 37.0 40.0 34.0 41.0 19 37.55835714285714 37.0 37.0 40.0 34.0 41.0 20 36.99011375661376 37.0 35.0 40.0 34.0 41.0 21 36.92420634920635 37.0 35.0 40.0 34.0 41.0 22 36.72677248677249 37.0 35.0 40.0 33.0 41.0 23 36.61012962962963 36.0 35.0 40.0 33.0 41.0 24 36.421632275132275 36.0 35.0 40.0 33.0 41.0 25 36.26244708994709 36.0 35.0 40.0 33.0 41.0 26 36.415433862433865 36.0 35.0 40.0 33.0 41.0 27 36.45158994708995 36.0 35.0 40.0 33.0 41.0 28 36.39180423280423 36.0 35.0 40.0 33.0 41.0 29 36.30883333333333 36.0 35.0 40.0 33.0 41.0 30 36.017798941798944 36.0 35.0 40.0 32.0 41.0 31 35.4189708994709 36.0 35.0 40.0 30.0 41.0 32 34.70436772486772 36.0 35.0 40.0 23.0 41.0 33 33.736478835978836 36.0 34.0 40.0 16.0 41.0 34 32.95071957671958 36.0 33.0 40.0 10.0 41.0 35 32.54042857142857 36.0 33.0 40.0 10.0 41.0 36 32.33603703703704 36.0 32.0 40.0 9.0 41.0 37 32.15971428571429 36.0 31.0 40.0 8.0 41.0 38 32.04564285714286 36.0 31.0 40.0 8.0 41.0 39 32.029272486772484 36.0 31.0 40.0 8.0 41.0 40 31.883899470899472 36.0 31.0 40.0 8.0 41.0 41 31.718481481481483 36.0 30.0 40.0 7.0 41.0 42 31.53962962962963 36.0 29.0 40.0 7.0 41.0 43 31.391153439153438 35.0 29.0 40.0 7.0 41.0 44 31.24124074074074 35.0 28.0 40.0 7.0 41.0 45 31.189537037037038 35.0 27.0 40.0 7.0 41.0 46 31.13901851851852 35.0 27.0 40.0 7.0 41.0 47 31.095613756613755 35.0 27.0 40.0 7.0 41.0 48 31.067089947089947 35.0 27.0 40.0 7.0 41.0 49 30.97116402116402 35.0 27.0 40.0 7.0 41.0 50 30.843777777777778 35.0 27.0 40.0 7.0 41.0 51 30.253740740740742 35.0 24.0 39.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 1.0 10 3.0 11 3.0 12 5.0 13 8.0 14 9.0 15 11.0 16 34.0 17 73.0 18 137.0 19 283.0 20 490.0 21 787.0 22 1334.0 23 2095.0 24 4002.0 25 8639.0 26 15446.0 27 19277.0 28 17312.0 29 13195.0 30 10526.0 31 9547.0 32 9997.0 33 12595.0 34 23915.0 35 36055.0 36 27053.0 37 33977.0 38 61007.0 39 70141.0 40 41.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.771957671957672 15.638359788359788 19.233333333333334 36.35634920634921 2 48.38439153439153 18.892592592592592 19.256084656084656 13.466931216931217 3 22.73227513227513 18.691798941798943 46.014550264550266 12.561375661375662 4 21.294708994708994 19.582275132275132 45.3510582010582 13.771957671957672 5 18.73095238095238 21.134126984126983 45.164550264550265 14.97037037037037 6 18.96640211640212 24.69047619047619 43.952380952380956 12.39074074074074 7 59.09973544973545 4.4944444444444445 32.46031746031746 3.945502645502646 8 59.9441798941799 3.766137566137566 31.432804232804234 4.856878306878307 9 55.785185185185185 4.9378306878306875 33.08227513227513 6.194708994708995 10 33.60846560846561 16.94814814814815 38.485978835978834 10.957407407407407 11 26.824074074074073 17.72142857142857 41.6457671957672 13.808730158730159 12 23.20132275132275 16.973280423280425 44.91587301587302 14.909523809523808 13 17.33068783068783 22.193386243386243 45.980687830687835 14.495238095238093 14 13.661904761904761 25.066402116402113 45.55846560846561 15.713227513227512 15 11.798941798941799 19.964285714285715 54.36507936507936 13.871693121693122 16 13.265608465608466 17.807142857142857 51.830423280423275 17.096825396825395 17 13.17962962962963 17.57063492063492 46.2489417989418 23.00079365079365 18 15.52089947089947 18.617460317460317 48.41587301587302 17.445767195767196 19 17.214550264550265 19.734391534391534 45.34391534391534 17.70714285714286 20 19.598412698412698 19.201322751322753 45.69656084656085 15.503703703703703 21 16.775132275132275 20.946825396825396 45.621428571428574 16.656613756613755 22 15.574867724867724 20.005555555555553 44.20793650793651 20.211640211640212 23 14.50873015873016 20.96058201058201 45.00343915343915 19.527248677248675 24 16.62195767195767 18.08941798941799 47.26190476190476 18.02671957671958 25 14.056878306878307 19.92222222222222 46.50608465608465 19.514814814814816 26 14.88862433862434 21.963227513227512 45.56878306878307 17.57936507936508 27 15.09047619047619 22.176455026455027 45.83783068783069 16.895238095238096 28 13.056084656084657 20.94126984126984 48.733333333333334 17.26931216931217 29 16.279894179894182 18.83862433862434 47.51772486772487 17.363756613756614 30 17.364285714285714 20.29867724867725 44.27010582010582 18.066931216931216 31 18.322751322751323 23.727513227513228 40.17089947089947 17.77883597883598 32 20.38068783068783 22.770899470899472 39.91111111111111 16.937301587301587 33 19.154497354497355 24.73174603174603 37.348412698412695 18.765343915343916 34 17.598148148148148 25.601851851851855 37.342063492063495 19.45793650793651 35 19.124867724867727 23.817195767195766 35.46402116402116 21.59391534391534 36 21.03386243386243 26.637037037037036 33.800529100529104 18.52857142857143 37 18.738624338624337 27.35978835978836 36.267724867724866 17.633862433862436 38 18.789682539682538 27.900264550264552 33.96349206349206 19.346560846560845 39 20.437037037037037 25.858994708994707 35.18465608465608 18.51931216931217 40 20.845502645502645 24.42037037037037 35.681481481481484 19.0526455026455 41 17.08068783068783 25.75899470899471 34.16534391534392 22.994973544973547 42 18.893915343915342 26.126190476190477 33.77566137566138 21.204232804232802 43 20.513227513227513 26.475925925925925 32.77513227513227 20.235714285714284 44 19.007936507936506 27.235978835978834 32.33862433862434 21.417460317460318 45 19.1031746031746 26.09391534391534 31.603174603174605 23.19973544973545 46 21.0010582010582 24.942063492063493 33.73148148148148 20.325396825396822 47 17.41269841269841 25.673809523809528 36.16058201058201 20.752910052910053 48 17.78888888888889 23.261904761904763 36.37460317460317 22.574603174603176 49 18.151587301587302 22.25925925925926 38.06560846560846 21.523544973544972 50 17.66878306878307 23.273015873015872 36.672751322751324 22.385449735449736 51 16.960317460317462 23.683597883597884 33.50925925925926 25.846825396825395 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 237.0 1 289.0 2 341.0 3 12523.0 4 24705.0 5 17057.0 6 9409.0 7 9482.5 8 9556.0 9 9799.0 10 10042.0 11 9834.5 12 9627.0 13 8933.5 14 8240.0 15 7529.0 16 6818.0 17 6151.5 18 5485.0 19 4979.0 20 4473.0 21 3995.0 22 3517.0 23 3293.5 24 3070.0 25 2969.0 26 3160.5 27 3453.0 28 3319.0 29 3185.0 30 3626.0 31 4067.0 32 4640.0 33 5213.0 34 4984.5 35 4756.0 36 5858.0 37 6960.0 38 7649.0 39 8338.0 40 10791.0 41 13244.0 42 15039.5 43 16835.0 44 20339.5 45 23844.0 46 27102.5 47 30361.0 48 32359.0 49 34357.0 50 34350.0 51 34343.0 52 28698.0 53 23053.0 54 19529.5 55 16006.0 56 14036.5 57 12067.0 58 11233.5 59 10400.0 60 9734.5 61 9069.0 62 8161.5 63 7254.0 64 6075.5 65 4897.0 66 3995.0 67 3093.0 68 2593.5 69 2094.0 70 1606.0 71 1118.0 72 916.0 73 714.0 74 575.0 75 332.0 76 228.0 77 175.0 78 122.0 79 79.5 80 37.0 81 31.0 82 25.0 83 31.5 84 38.0 85 20.5 86 3.0 87 2.5 88 2.0 89 1.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 378000.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.34288046492489 #Duplication Level Percentage of deduplicated Percentage of total 1 78.32886082599877 30.816830084310077 2 9.67680388028957 7.614266766895078 3 3.699579740100703 4.366563704557196 4 1.7900093317487704 2.8169649268036783 5 1.0437909571226593 2.053287142822316 6 0.6591790369612909 1.5560401233691423 7 0.4337688034943559 1.1945999929704356 8 0.3147148358037345 0.9905430532451831 9 0.24341896121380763 0.8619122784537919 >10 3.5082041952612872 33.52594484547884 >50 0.26709608137074137 6.470357016268507 >100 0.027794262274620292 1.9864476115897707 >500 0.004745361851764439 1.2204597570669697 >1k 0.0013558176719326972 0.9718870967552531 >5k 0.0 0.0 >10k+ 6.779088359663486E-4 3.5538955994137615 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13325 3.525132275132275 No Hit GCTGTCTCTTATACACATCTGACGCGCAGGATATCGTATGCCGTCTTCTGC 1836 0.48571428571428565 RNA PCR Primer, Index 23 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCGCAGGATATCGTATGCCGTCTTCTGC 1808 0.4783068783068783 RNA PCR Primer, Index 1 (95% over 22bp) CTGTCTCTTATACACATCTGACGCGCAGGATATCGTATGCCGTCTTCTGCT 918 0.24285714285714283 Illumina Paired End PCR Primer 2 (95% over 23bp) GAATGATACGGCTGTCTCTTATACACATCTGACGCGCAGGATATCGTATGC 748 0.19788359788359788 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGCAGGATATCGTATGCCG 688 0.182010582010582 No Hit TCTGTCTCTTATACACATCTGACGCGCAGGATATCGTATGCCGTCTTCTGC 658 0.17407407407407408 RNA PCR Primer, Index 23 (95% over 23bp) CGCTGTCTCTTATACACATCTGACGCGCAGGATATCGTATGCCGTCTTCTG 538 0.14232804232804233 Illumina Paired End PCR Primer 2 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCAGGATATCGTATGCC 520 0.1375661375661376 No Hit GAATCTGTCTCTTATACACATCTGACGCGCAGGATATCGTATGCCGTCTTC 506 0.13386243386243388 No Hit ACTGTCTCTTATACACATCTGACGCGCAGGATATCGTATGCCGTCTTCTGC 454 0.1201058201058201 RNA PCR Primer, Index 23 (95% over 23bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.291005291005291E-4 0.0 0.0 0.25846560846560845 0.0 2 5.291005291005291E-4 0.0 0.0 1.6222222222222222 0.0 3 5.291005291005291E-4 0.0 0.0 2.2293650793650794 0.0 4 5.291005291005291E-4 0.0 0.0 2.805026455026455 0.0 5 5.291005291005291E-4 0.0 0.0 4.4034391534391535 0.0 6 5.291005291005291E-4 0.0 0.0 5.187037037037037 0.0 7 5.291005291005291E-4 0.0 0.0 6.064550264550265 0.0 8 5.291005291005291E-4 0.0 0.0 7.474603174603175 0.0 9 5.291005291005291E-4 0.0 0.0 8.003174603174603 0.0 10 5.291005291005291E-4 0.0 0.0 9.203174603174602 0.0 11 5.291005291005291E-4 0.0 0.0 10.797883597883597 0.0 12 5.291005291005291E-4 0.0 0.0 12.256613756613756 0.0 13 5.291005291005291E-4 0.0 0.0 12.742857142857142 0.0 14 5.291005291005291E-4 0.0 0.0 12.92116402116402 0.0 15 5.291005291005291E-4 0.0 0.0 13.262698412698413 0.0 16 5.291005291005291E-4 0.0 0.0 13.993650793650794 0.0 17 5.291005291005291E-4 0.0 0.0 14.950264550264551 0.0 18 5.291005291005291E-4 0.0 0.0 16.12037037037037 0.0 19 5.291005291005291E-4 0.0 0.0 16.747089947089947 0.0 20 5.291005291005291E-4 0.0 0.0 17.31984126984127 0.0 21 5.291005291005291E-4 0.0 0.0 18.030423280423282 0.0 22 5.291005291005291E-4 0.0 0.0 18.738359788359787 0.0 23 5.291005291005291E-4 0.0 0.0 19.47010582010582 0.0 24 5.291005291005291E-4 0.0 0.0 20.021693121693122 0.0 25 5.291005291005291E-4 0.0 0.0 20.534656084656085 0.0 26 5.291005291005291E-4 0.0 0.0 20.992857142857144 0.0 27 5.291005291005291E-4 0.0 0.0 21.43994708994709 0.0 28 5.291005291005291E-4 0.0 0.0 21.862433862433864 0.0 29 5.291005291005291E-4 0.0 0.0 22.313756613756613 0.0 30 5.291005291005291E-4 0.0 0.0 22.83941798941799 0.0 31 5.291005291005291E-4 0.0 0.0 23.344444444444445 0.0 32 5.291005291005291E-4 0.0 0.0 23.823809523809523 0.0 33 5.291005291005291E-4 0.0 0.0 24.265608465608466 0.0 34 5.291005291005291E-4 0.0 0.0 24.725132275132275 0.0 35 5.291005291005291E-4 0.0 0.0 25.26825396825397 0.0 36 5.291005291005291E-4 0.0 0.0 25.761111111111113 0.0 37 5.291005291005291E-4 0.0 0.0 26.197089947089946 0.0 38 5.291005291005291E-4 0.0 0.0 26.63968253968254 0.0 39 5.291005291005291E-4 0.0 0.0 27.053174603174604 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTTTGCG 20 7.0272724E-4 45.000004 1 CCGGGAT 20 7.0272724E-4 45.000004 6 CTATCGG 20 7.0272724E-4 45.000004 2 CCGTGTG 20 7.0272724E-4 45.000004 20 CGATTTA 20 7.0272724E-4 45.000004 12 CTCCACG 20 7.0272724E-4 45.000004 1 AATGGAT 20 7.0272724E-4 45.000004 15 TGCGGGT 40 6.7939254E-9 45.000004 4 CGTTCAG 20 7.0272724E-4 45.000004 38 TTGAGCG 20 7.0272724E-4 45.000004 1 TAGCAAG 20 7.0272724E-4 45.000004 1 ACCTAGG 20 7.0272724E-4 45.000004 2 TCCACGG 20 7.0272724E-4 45.000004 2 AGTCTCG 20 7.0272724E-4 45.000004 30 CTCGCGC 20 7.0272724E-4 45.000004 33 GCGATAC 20 7.0272724E-4 45.000004 9 CCCCAGT 20 7.0272724E-4 45.000004 39 CGAGCCG 20 7.0272724E-4 45.000004 24 CGTGTGC 20 7.0272724E-4 45.000004 21 TGCTATG 20 7.0272724E-4 45.000004 1 >>END_MODULE