SRR2934910.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934910.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1131094
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	43340	3.831688612971159	No Hit
GCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGC	3143	0.2778725729249735	No Hit
CCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGC	2757	0.24374631993450585	No Hit
CTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGCT	1386	0.12253623483105738	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	1139	0.1006989693164317	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTTGA	20	7.03324E-4	45.0	14
ATTGTCG	20	7.03324E-4	45.0	12
TCAATCG	20	7.03324E-4	45.0	39
TCTACGT	20	7.03324E-4	45.0	32
ACGTGCA	20	7.03324E-4	45.0	35
CGTAAAG	20	7.03324E-4	45.0	1
CGGTCCA	20	7.03324E-4	45.0	27
TATACGG	50	2.1827873E-11	45.0	2
CGATATA	20	7.03324E-4	45.0	10
CGTTTTT	29355	0.0	44.40214	1
GAGCACG	75	0.0	42.0	1
GTTTTTT	32780	0.0	39.865772	2
TTTAGCG	40	3.4581535E-7	39.375	1
TGTTACG	40	3.4581535E-7	39.375	1
TATAGCG	40	3.4581535E-7	39.375	1
ACGAAGG	160	0.0	39.375	2
CTCAACG	35	6.2482013E-6	38.571426	1
AGATACG	35	6.2482013E-6	38.571426	1
TCGACAG	35	6.2482013E-6	38.571426	1
GTAAGCG	65	9.094947E-12	38.076927	1