##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934904.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1389803 Sequences flagged as poor quality 0 Sequence length 51 %GC 36 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.66534897391932 34.0 31.0 34.0 31.0 34.0 2 32.82556664505689 34.0 31.0 34.0 31.0 34.0 3 32.870031939778514 34.0 31.0 34.0 31.0 34.0 4 36.250765756010026 37.0 37.0 37.0 35.0 37.0 5 36.14393766598575 37.0 37.0 37.0 35.0 37.0 6 36.13721009380466 37.0 36.0 37.0 35.0 37.0 7 36.29460002604686 37.0 37.0 37.0 35.0 37.0 8 36.31819761505767 37.0 37.0 37.0 35.0 37.0 9 38.112054010532425 39.0 39.0 39.0 37.0 39.0 10 37.7153733298892 39.0 38.0 39.0 35.0 39.0 11 37.553932463809616 39.0 37.0 39.0 35.0 39.0 12 37.60695508644031 39.0 37.0 39.0 35.0 39.0 13 37.61853370585615 39.0 37.0 39.0 35.0 39.0 14 38.95650678549406 40.0 38.0 41.0 35.0 41.0 15 38.999643834413945 40.0 38.0 41.0 35.0 41.0 16 39.073029774723466 41.0 38.0 41.0 35.0 41.0 17 39.08328806312837 41.0 38.0 41.0 35.0 41.0 18 38.56310210871613 39.0 38.0 41.0 35.0 41.0 19 38.07591219762801 39.0 37.0 41.0 35.0 41.0 20 37.51281728417624 39.0 35.0 41.0 35.0 41.0 21 37.46679853187826 39.0 35.0 41.0 35.0 41.0 22 37.27343515591778 38.0 35.0 41.0 34.0 41.0 23 37.171864645564874 38.0 35.0 40.0 34.0 41.0 24 36.99160096790696 38.0 35.0 40.0 34.0 41.0 25 36.8606629860491 38.0 35.0 40.0 33.0 41.0 26 36.98617142141728 38.0 35.0 40.0 34.0 41.0 27 37.0281514718273 38.0 35.0 40.0 34.0 41.0 28 36.9729076710872 38.0 35.0 40.0 34.0 41.0 29 36.84223015779934 38.0 35.0 41.0 33.0 41.0 30 36.52054499810405 38.0 35.0 41.0 33.0 41.0 31 35.99314507163965 38.0 35.0 41.0 31.0 41.0 32 35.24641765775437 38.0 35.0 41.0 23.0 41.0 33 34.272882559614565 38.0 35.0 41.0 16.0 41.0 34 33.47993564555552 38.0 34.0 41.0 12.0 41.0 35 32.980437515244965 38.0 33.0 41.0 10.0 41.0 36 32.72987754379577 38.0 33.0 41.0 8.0 41.0 37 32.51190276607548 38.0 31.0 41.0 8.0 41.0 38 32.36527263216441 38.0 31.0 41.0 8.0 41.0 39 32.26501022087303 38.0 31.0 41.0 7.0 41.0 40 32.14318144370101 38.0 30.0 41.0 7.0 41.0 41 32.031194349127176 38.0 30.0 41.0 7.0 41.0 42 31.9252476789876 38.0 29.0 41.0 7.0 41.0 43 31.833369189734086 38.0 29.0 41.0 7.0 41.0 44 31.727974396371284 38.0 28.0 41.0 7.0 41.0 45 31.68899405167495 38.0 27.0 40.0 7.0 41.0 46 31.643991990231708 37.0 27.0 40.0 7.0 41.0 47 31.64644917301229 37.0 27.0 40.0 7.0 41.0 48 31.61019295540447 37.0 27.0 40.0 7.0 41.0 49 31.502258233720895 37.0 27.0 40.0 7.0 41.0 50 31.430647365130167 37.0 27.0 40.0 7.0 41.0 51 30.918154587376772 36.0 25.0 40.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 2.0 9 8.0 10 9.0 11 13.0 12 25.0 13 23.0 14 25.0 15 43.0 16 91.0 17 188.0 18 381.0 19 691.0 20 1348.0 21 2214.0 22 3674.0 23 6803.0 24 13587.0 25 30101.0 26 55582.0 27 70701.0 28 65395.0 29 51378.0 30 38161.0 31 32557.0 32 30791.0 33 35208.0 34 59479.0 35 81103.0 36 87454.0 37 118813.0 38 241571.0 39 362118.0 40 263.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.553905121805034 16.41721884324613 18.628539440481852 37.400336594466985 2 50.7358956629105 18.461681259862008 18.29957195372294 12.502851123504556 3 23.16040474801105 17.871309818729706 46.7041012287353 12.26418420452395 4 21.613350956934184 19.060902876163023 46.12142872047333 13.204317446429458 5 18.581554364179674 21.742937668144336 45.61027713999754 14.065230827678455 6 20.07816935205925 24.309344561783217 44.28174352767982 11.330742558477711 7 59.77955149039108 4.341118849218199 32.24795168811695 3.631377972273768 8 60.5752038238513 3.5918040182673376 32.08001421784238 3.752977940038984 9 55.84100768238376 6.239589351872172 33.62044836570363 4.298954600040437 10 26.75235267156568 26.154642060781274 38.347089479588114 8.745915788064927 11 18.632640741169794 18.868717364979066 48.63077716769931 13.867864726151835 12 18.968371776431624 16.617535003162317 50.1675417307345 14.246551489671559 13 16.784033420563922 18.673293984830945 50.2934588571186 14.249213737486535 14 13.618764673842264 21.300932578214322 48.807564813142584 16.272737934800833 15 13.283177543867728 20.82784394622835 51.7705027259259 14.118475783978019 16 14.96773283695603 19.964556127738966 50.06450554503048 15.00320549027452 17 15.223092769262983 19.930522527293437 47.58911874560639 17.25726595783719 18 14.898010725261063 20.58025489943539 48.97341565675135 15.548318718552197 19 15.9536279602217 20.826620751286335 47.81584152574142 15.403909762750548 20 17.662647152150342 19.984630915316774 48.16905705340972 14.183664879123157 21 17.251509746345345 19.825471667567275 48.96643625031749 13.956582335769891 22 15.898800045761883 19.197253135876093 47.50961107437529 17.394335743986737 23 14.675173387883031 19.733588141628704 48.64452012263609 16.946718347852176 24 15.646246266557204 18.968587634362567 49.088899649806486 16.296266449273748 25 14.680497883512988 20.547804257150116 47.67064109085964 17.10105676847726 26 13.841242248002056 22.18479885278705 48.31159524047653 15.662363658734368 27 15.224963537997832 21.35137138141161 48.58436771254631 14.83929736804425 28 14.255977285989452 20.351589397921863 49.388726315887936 16.003707000200748 29 15.344189068522663 19.40713899739747 48.9215378006811 16.32713413339876 30 15.754750853178473 19.574500846522852 48.76827866971074 15.902469630587932 31 16.698121964048145 21.6886853748337 45.34779389596943 16.26539876514873 32 16.80936075112804 22.396339625112336 44.207920115296915 16.58637950846271 33 16.796840991133273 23.634572669651742 43.10402265644843 16.46456368276655 34 16.62645713097468 24.309128703852274 41.23936989630905 17.825044268864005 35 16.438157062547713 24.096868405090504 40.031860630607355 19.43311390175442 36 17.476361757745522 26.101900772987253 39.207571144975226 17.214166324292005 37 18.389944474144897 26.987493911007533 38.2699562455974 16.352605369250174 38 18.013488242578266 26.823010167628077 36.06863706582875 19.094864523964908 39 18.263307821324318 26.581249284970603 37.24103344143019 17.91440945227489 40 17.913258209976522 25.9242496958202 38.04827015051774 18.114221943685543 41 16.00356309491345 27.15197765438699 36.03395589159039 20.81050335910917 42 17.493774297508352 26.912159493108017 35.76622010457597 19.82784610480766 43 19.096519434768812 26.104563020802228 36.19606519772946 18.602852346699496 44 18.367711107257648 26.129170824929865 36.055325826753865 19.447792241058625 45 17.945780804905443 24.916984637391053 36.43199791625144 20.705236641452064 46 18.022626228321567 25.484834901061515 37.30859697381571 19.1839418968012 47 16.312455794094557 25.07564021663502 39.14972121948219 19.462182769788235 48 16.82785258054559 23.961597435032157 38.66080300589364 20.549746978528614 49 17.56565498851276 23.30171974013583 39.683897645925356 19.44872762542605 50 16.85598606421198 23.522038734986182 39.14238204983008 20.479593150971755 51 15.972551505501139 23.329349555296687 37.31068360048151 23.38741533872067 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 441.0 1 832.5 2 1224.0 3 54682.5 4 108141.0 5 75643.5 6 43146.0 7 41160.5 8 39175.0 9 37859.5 10 36544.0 11 35110.0 12 33676.0 13 31400.5 14 29125.0 15 26501.0 16 23877.0 17 21520.5 18 19164.0 19 18047.0 20 16930.0 21 15903.5 22 14877.0 23 14465.5 24 14054.0 25 14604.0 26 16402.5 27 17651.0 28 18739.0 29 19827.0 30 21700.5 31 23574.0 32 26343.5 33 29113.0 34 33033.0 35 36953.0 36 37946.5 37 38940.0 38 43034.5 39 47129.0 40 53459.5 41 59790.0 42 67131.0 43 74472.0 44 85488.0 45 96504.0 46 104552.5 47 112601.0 48 110920.0 49 109239.0 50 91595.5 51 73952.0 52 64074.0 53 54196.0 54 49035.5 55 43875.0 56 39982.5 57 36090.0 58 33299.5 59 30509.0 60 29408.5 61 28308.0 62 25565.0 63 22822.0 64 18868.5 65 14915.0 66 11584.0 67 8253.0 68 6941.5 69 5630.0 70 4841.0 71 4052.0 72 3174.0 73 2296.0 74 1937.0 75 1359.0 76 1140.0 77 824.5 78 509.0 79 330.5 80 152.0 81 123.0 82 94.0 83 66.0 84 38.0 85 42.5 86 47.0 87 32.5 88 18.0 89 12.0 90 6.0 91 3.5 92 1.0 93 0.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1389803.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.61374058935133 #Duplication Level Percentage of deduplicated Percentage of total 1 76.26078265784655 24.8714938274391 2 10.34212538784684 6.745907890835627 3 3.934406811679482 3.849471693872745 4 2.011722216234112 2.6243914599237708 5 1.1624499591250892 1.895592070750386 6 0.7568803129736781 1.4810818910706351 7 0.4981814684549243 1.137329282502771 8 0.38011023629809265 0.9917453313586424 9 0.2904677972332234 0.8525917249672185 >10 3.540914735143804 29.0815312042843 >50 0.7315622767446206 15.195832823880265 >100 0.08432475791928633 4.980330640671974 >500 0.0033729902779683647 0.7589668893388862 >1k 0.0024735262038434675 1.6292596785730695 >5k 0.0 0.0 >10k+ 2.248660185312243E-4 3.904473590530708 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 53240 3.830758747822533 No Hit CCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC 4777 0.34371777870676634 No Hit GCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC 4132 0.29730832355376985 No Hit CTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGCT 2392 0.17211072360615137 No Hit CGCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTG 1670 0.1201609148922545 No Hit TCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC 1637 0.11778647765186864 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 1501 0.10800091811573294 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.439052872961132E-4 0.0 0.0 0.18117675670580652 0.0 2 1.439052872961132E-4 0.0 0.0 1.0789298915026087 0.0 3 1.439052872961132E-4 0.0 0.0 1.5213666972945086 0.0 4 1.439052872961132E-4 0.0 0.0 1.9635876451554646 0.0 5 1.439052872961132E-4 0.0 0.0 3.104684620769994 0.0 6 1.439052872961132E-4 0.0 0.0 3.6579284977799014 0.0 7 1.439052872961132E-4 0.0 0.0 4.257294019368213 0.0 8 1.439052872961132E-4 0.0 0.0 5.1886490387486575 0.0 9 1.439052872961132E-4 0.0 0.0 5.511428598153839 0.0 10 1.439052872961132E-4 0.0 0.0 6.202317882462478 0.0 11 1.439052872961132E-4 0.0 0.0 7.374642305420265 0.0 12 1.439052872961132E-4 0.0 0.0 8.324273296287316 0.0 13 1.439052872961132E-4 0.0 0.0 8.684252372458543 0.0 14 1.439052872961132E-4 0.0 0.0 8.829524759983968 0.0 15 1.439052872961132E-4 0.0 0.0 9.096756878492851 0.0 16 1.439052872961132E-4 0.0 0.0 9.688135656636229 0.0 17 1.439052872961132E-4 0.0 0.0 10.44147983563138 0.0 18 1.439052872961132E-4 0.0 0.0 11.291600320333169 0.0 19 1.439052872961132E-4 0.0 0.0 11.798218884259136 0.0 20 1.439052872961132E-4 0.0 0.0 12.280085738770172 0.0 21 1.439052872961132E-4 0.0 0.0 12.874342622659471 0.0 22 1.439052872961132E-4 0.0 0.0 13.526953100547344 0.0 23 1.439052872961132E-4 0.0 0.0 14.152941100285435 0.0 24 1.439052872961132E-4 0.0 0.0 14.646752093642048 0.0 25 1.439052872961132E-4 0.0 0.0 15.070121448867214 0.0 26 1.439052872961132E-4 0.0 0.0 15.481114949384914 0.0 27 1.439052872961132E-4 0.0 0.0 15.883114369446606 0.0 28 1.439052872961132E-4 0.0 0.0 16.295115206975378 0.0 29 1.439052872961132E-4 0.0 0.0 16.75086325184217 0.0 30 1.439052872961132E-4 0.0 0.0 17.245897440140798 0.0 31 1.439052872961132E-4 0.0 0.0 17.721000746148913 0.0 32 1.439052872961132E-4 0.0 0.0 18.15055802872781 0.0 33 1.439052872961132E-4 0.0 0.0 18.54133283638041 0.0 34 1.439052872961132E-4 0.0 0.0 18.943835924947635 0.0 35 2.1585793094416978E-4 0.0 0.0 19.373033444308295 0.0 36 2.1585793094416978E-4 0.0 0.0 19.813167765503458 0.0 37 2.1585793094416978E-4 0.0 0.0 20.234522446706475 0.0 38 2.1585793094416978E-4 0.0 0.0 20.6464513315916 0.0 39 2.878105745922264E-4 0.0 0.0 21.053559389352305 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATACG 20 7.033798E-4 45.0 1 GGCGTAT 20 7.033798E-4 45.0 37 TAGCGCG 40 6.8175723E-9 45.0 1 ATCGTCA 20 7.033798E-4 45.0 10 CGCCTAC 20 7.033798E-4 45.0 19 ACGATGC 20 7.033798E-4 45.0 11 TGATTCG 45 3.8562575E-10 45.0 1 ATGTTCG 20 7.033798E-4 45.0 40 TCGGTAA 20 7.033798E-4 45.0 37 ACGCGAG 25 3.8912294E-5 44.999996 1 GATCGTC 25 3.8912294E-5 44.999996 9 TCGATCA 25 3.8912294E-5 44.999996 17 AACGCGT 25 3.8912294E-5 44.999996 43 TAGGACG 30 2.1658307E-6 44.999996 1 TATCGTG 30 2.1658307E-6 44.999996 1 CGGAGTA 25 3.8912294E-5 44.999996 19 CGTTTTT 37750 0.0 44.46954 1 TCGTTGA 70 0.0 41.785717 24 CTAACGG 60 3.6379788E-12 41.249996 2 TACGGGT 55 6.184564E-11 40.909092 4 >>END_MODULE