SRR2934903.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934903.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1441627
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	54994	3.814717676625091	No Hit
GCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTCTGC	4350	0.30174240632285604	TruSeq Adapter, Index 13 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTCTGC	3302	0.2290467645236944	TruSeq Adapter, Index 13 (95% over 22bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGC	2088	0.1448363550349709	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCG	2043	0.14171488186611378	No Hit
CTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTCTGCT	1919	0.13311348913415189	TruSeq Adapter, Index 16 (95% over 22bp)
GAATCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTC	1890	0.13110187309199953	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	1559	0.10814170378329485	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGAAT	230	0.0	45.000004	12
CGAATAT	230	0.0	45.000004	14
AACGTCG	20	7.033885E-4	45.0	2
CTATGCG	35	1.2122109E-7	45.0	1
TCCGCAC	25	3.8913015E-5	45.0	33
AGATTCG	20	7.033885E-4	45.0	1
CGTACAT	25	3.8913015E-5	45.0	35
AATACGG	35	1.2122109E-7	45.0	2
TCGCGAT	20	7.033885E-4	45.0	33
CGTTTTT	38095	0.0	44.486153	1
GCTACGA	255	0.0	42.35294	10
CGGTCTA	70	0.0	41.785713	31
GTTTTTT	41750	0.0	40.78563	2
ATAGGGT	145	0.0	40.34483	4
TATACGG	45	1.9288564E-8	40.0	2
TCGACAG	45	1.9288564E-8	40.0	1
CCTATGC	220	0.0	39.886364	35
TCACGAC	80	0.0	39.375	25
TCGATAG	40	3.4590448E-7	39.375	1
CGTATAG	75	0.0	39.0	1