SRR2934901.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934901.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1389571
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	52597	3.785125049385746	No Hit
CCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGC	5175	0.3724170985145775	TruSeq Adapter, Index 23 (95% over 24bp)
GCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGC	4609	0.3316851028123068	TruSeq Adapter, Index 23 (95% over 24bp)
CTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGCT	2759	0.1985504878843902	Illumina Single End Adapter 1 (95% over 22bp)
CGCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTG	1922	0.13831607021159767	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1717	0.12356331558445016	No Hit
TCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGC	1675	0.12054080000230287	TruSeq Adapter, Index 23 (95% over 24bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	1407	0.1012542720019344	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAGTTA	35	1.2121745E-7	45.000004	38
TATTGCG	35	1.2121745E-7	45.000004	1
GGTATCG	35	1.2121745E-7	45.000004	1
ACGTATG	35	1.2121745E-7	45.000004	1
ATTAGCG	25	3.891228E-5	45.0	1
CGGTTAC	25	3.891228E-5	45.0	14
GTAGCGT	20	7.033796E-4	45.0	15
TATTCGC	25	3.891228E-5	45.0	40
TACTCGA	20	7.033796E-4	45.0	33
TCGTAAG	20	7.033796E-4	45.0	1
ACCCGTC	20	7.033796E-4	45.0	41
TCGGTAC	25	3.891228E-5	45.0	33
GCGTACA	25	3.891228E-5	45.0	31
CGTTTTT	35640	0.0	44.29924	1
CTACGAA	130	0.0	41.538464	11
CGGGTAT	120	0.0	41.249996	6
ACGAGGT	55	6.184564E-11	40.909092	31
ACGAGTT	50	1.0822987E-9	40.5	37
TTACACG	50	1.0822987E-9	40.5	34
TGCAACG	95	0.0	40.263157	1