SRR2934900.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934900.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	785702
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	31600	4.021881069413085	No Hit
CCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGC	6336	0.806412609360801	No Hit
GCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGC	5787	0.7365387895156178	No Hit
CTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGCT	3225	0.41046096357143036	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGC	2622	0.33371430898737686	No Hit
CGCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTG	1807	0.2299854143173875	No Hit
ACTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGC	1626	0.20694869047043282	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCC	1461	0.18594836210166196	No Hit
GCCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTG	1002	0.12752926682126303	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTC	877	0.11161992714795177	No Hit
ACCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTG	873	0.11111082827840581	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTAGCG	35	1.211265E-7	45.000004	1
AACGCCG	35	1.211265E-7	45.000004	13
ACTAACG	30	2.164621E-6	45.000004	24
CATCGTT	35	1.211265E-7	45.000004	36
TCGAGAG	30	2.164621E-6	45.000004	1
TCTGGTA	35	1.211265E-7	45.000004	43
GGCTATC	35	1.211265E-7	45.000004	8
CGAAGTA	30	2.164621E-6	45.000004	27
AGATGCG	35	1.211265E-7	45.000004	1
GTTTGCG	25	3.889675E-5	45.0	1
AGATCCG	20	7.031924E-4	45.0	27
GCAAGCG	40	6.8102963E-9	45.0	1
ACACGAC	20	7.031924E-4	45.0	10
GTCGAGC	20	7.031924E-4	45.0	20
TTTACGA	25	3.889675E-5	45.0	16
ACCGCGT	20	7.031924E-4	45.0	37
TAGGTCG	20	7.031924E-4	45.0	1
CATTGCG	25	3.889675E-5	45.0	1
GCCGGTT	20	7.031924E-4	45.0	39
TGTATCG	20	7.031924E-4	45.0	1