##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934898.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1503213 Sequences flagged as poor quality 0 Sequence length 51 %GC 37 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.39397610318697 34.0 31.0 34.0 30.0 34.0 2 32.575697522573314 34.0 31.0 34.0 31.0 34.0 3 32.64034571281648 34.0 31.0 34.0 31.0 34.0 4 36.0787918944288 37.0 35.0 37.0 35.0 37.0 5 35.95030045642234 37.0 35.0 37.0 35.0 37.0 6 35.93801144614901 37.0 35.0 37.0 35.0 37.0 7 36.14067800105507 37.0 36.0 37.0 35.0 37.0 8 36.156190107456496 37.0 37.0 37.0 35.0 37.0 9 37.939321307093536 39.0 39.0 39.0 35.0 39.0 10 37.40118067100271 39.0 37.0 39.0 34.0 39.0 11 37.29946920363248 39.0 37.0 39.0 34.0 39.0 12 37.33904509873185 39.0 37.0 39.0 34.0 39.0 13 37.33400123601911 39.0 37.0 39.0 34.0 39.0 14 38.57226221433689 40.0 38.0 41.0 34.0 41.0 15 38.61240090393045 40.0 38.0 41.0 34.0 41.0 16 38.70227439491276 40.0 38.0 41.0 35.0 41.0 17 38.71535770379846 40.0 38.0 41.0 34.0 41.0 18 38.245504130153215 39.0 38.0 40.0 34.0 41.0 19 37.75112309433194 38.0 37.0 40.0 34.0 41.0 20 37.204732795684976 38.0 35.0 40.0 34.0 41.0 21 37.17331010309251 38.0 35.0 40.0 34.0 41.0 22 37.00036388722024 38.0 35.0 40.0 34.0 41.0 23 36.86916558065956 38.0 35.0 40.0 33.0 41.0 24 36.653486897731725 37.0 35.0 40.0 33.0 41.0 25 36.522460888776244 37.0 35.0 40.0 33.0 41.0 26 36.69043841425001 38.0 35.0 40.0 33.0 41.0 27 36.742337912192085 38.0 35.0 40.0 33.0 41.0 28 36.70615275413398 38.0 35.0 40.0 33.0 41.0 29 36.62632241738197 38.0 35.0 40.0 33.0 41.0 30 36.30633050672127 38.0 35.0 40.0 32.0 41.0 31 35.85919826398521 38.0 35.0 40.0 31.0 41.0 32 35.16975305562153 38.0 35.0 40.0 24.0 41.0 33 34.19498833498646 38.0 34.0 40.0 18.0 41.0 34 33.41530907462881 38.0 33.0 40.0 12.0 41.0 35 32.893229369357506 38.0 33.0 40.0 10.0 41.0 36 32.62830882915462 38.0 32.0 40.0 8.0 41.0 37 32.43198668452175 38.0 31.0 40.0 8.0 41.0 38 32.32955076891964 38.0 31.0 40.0 8.0 41.0 39 32.31032461800157 38.0 31.0 40.0 8.0 41.0 40 32.21559153626266 38.0 31.0 40.0 8.0 41.0 41 32.07732902788893 38.0 30.0 40.0 7.0 41.0 42 31.950984990151095 38.0 30.0 40.0 7.0 41.0 43 31.856225963985143 37.0 30.0 40.0 7.0 41.0 44 31.764953469667972 37.0 29.0 40.0 7.0 41.0 45 31.72288025715584 37.0 29.0 40.0 7.0 41.0 46 31.625478225640677 37.0 28.0 40.0 7.0 41.0 47 31.59335170730961 37.0 28.0 40.0 7.0 41.0 48 31.534629490298446 37.0 28.0 40.0 7.0 41.0 49 31.42624431800417 37.0 27.0 40.0 7.0 41.0 50 31.31977836806893 36.0 27.0 40.0 7.0 41.0 51 30.713262192383915 35.0 26.0 40.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 3.0 9 8.0 10 11.0 11 8.0 12 12.0 13 15.0 14 32.0 15 56.0 16 113.0 17 239.0 18 481.0 19 927.0 20 1636.0 21 2695.0 22 4440.0 23 8037.0 24 16042.0 25 35517.0 26 61868.0 27 73707.0 28 64348.0 29 50853.0 30 41465.0 31 37354.0 32 38268.0 33 45971.0 34 75812.0 35 97010.0 36 108694.0 37 148593.0 38 278911.0 39 309902.0 40 184.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.122685873525572 17.13782411408097 19.675987368390242 34.063502644003215 2 49.36339693709408 18.69748332405321 18.519065495042952 13.420054243809759 3 22.287726356810378 17.299943520978065 47.13749814563871 13.274831976572848 4 20.58876553089948 19.33165825468513 45.74501417962723 14.334562034788151 5 18.406639644548044 21.648761685802345 45.304091968337154 14.640506701312455 6 19.124768080105746 24.388094035908416 44.521235513530016 11.965902370455817 7 58.70392286389221 4.1502435117312055 32.67161739553875 4.47421622883783 8 58.735122700508846 3.6926902574685028 32.447231363752174 5.124955678270478 9 53.89928107327437 5.521373218565832 34.55298750077334 6.026358207386445 10 28.54518953734434 17.65731137237371 41.50682571265683 12.290673377625128 11 20.8170764888276 19.143860517438313 44.09807525613469 15.940987737599396 12 18.894394872849023 16.61906862167903 48.7491792580293 15.737357247442644 13 17.14866755409912 19.56582333973961 49.13049581130552 14.155013294855753 14 14.708228308296961 21.33875904479272 47.568242158629545 16.38477048828077 15 14.00679743988377 20.14591411862457 50.71749645592474 15.129791985566914 16 15.208090935882007 19.869905329450983 48.17607351719284 16.745930217474168 17 15.432343919324806 20.41280909624917 45.465479609343454 18.689367375082576 18 16.146015235365844 19.681908019688493 48.534771852026296 15.637304892919367 19 15.840403189700995 21.92523614417917 45.79923137971797 16.43512928640186 20 16.526400450235595 21.458036884992346 46.77879981080525 15.236762853966804 21 16.037314738496807 21.925901385898072 47.14441665951532 14.892367216089802 22 14.832761558075935 20.30703566294331 45.69385709144346 19.166345687537294 23 14.364431387966976 20.33790287870049 46.48842180050332 18.809243932829215 24 16.223781992305813 18.93124926407635 47.329486905714624 17.51548183790321 25 14.118092379456538 21.26478416565051 45.265774045328236 19.351349409564715 26 14.346336813212766 21.517110349631093 46.918300999259586 17.21825183789656 27 15.75631663643143 21.768704767720877 45.903474757070356 16.57150383877734 28 12.9922372943821 21.23118945884582 47.9143674249757 17.86220582179638 29 15.477314259522768 19.141133026390804 47.66091033007299 17.720642384013445 30 15.805877144489836 22.424766150904762 45.47592390433026 16.29343280027514 31 15.422232245197453 22.74800710212059 44.869223456689106 16.96053719599285 32 16.912506743887924 22.759648832201425 43.31195911690492 17.015885307005725 33 16.205620893379713 24.072702936975666 41.382691607909194 18.33898456173543 34 15.73822206167722 23.009580145993947 42.16215532994991 19.090042462378918 35 18.167485246601778 23.969124801342193 38.035128754208486 19.828261197847542 36 17.41389942742645 27.07833154715932 36.57718500305678 18.930584022357444 37 16.541701009770403 25.87025258562825 40.163569633844304 17.42447677075704 38 16.57010683116764 26.93078093390624 37.45969466735586 19.039417567570265 39 17.52399693190519 24.784511576203773 38.0713179037169 19.62017358817413 40 19.333321358982396 23.771614534999365 38.14396229942131 18.751101806596935 41 18.586654053683677 24.95168682016454 34.90789395780904 21.553765168342743 42 18.502035307038987 24.025803395792877 35.674851135534354 21.79731016163378 43 18.317497254214803 23.92940987072358 36.89829718077212 20.8547956942895 44 16.675348071098373 24.125589653628595 36.88179918614328 22.317263089129753 45 17.989266990107193 23.066591361304088 36.7202784967932 22.22386315179552 46 19.076538055485152 24.178875515312868 36.93308932267084 19.811497106531142 47 16.538707422035333 23.144491166587837 40.11287821486376 20.203923196513067 48 16.46812527565954 21.767241235939284 39.238284927019656 22.52634856138152 49 17.33932583073723 20.7989153899015 40.265950334383746 21.595808444977525 50 16.7792588275913 20.83809812714499 39.703954130253 22.678688915010714 51 16.52021370224978 20.656154517024532 36.890846473520384 25.932785307205297 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 457.0 1 797.0 2 1137.0 3 55324.5 4 109512.0 5 75307.0 6 41102.0 7 38810.0 8 36518.0 9 35988.0 10 35458.0 11 34569.5 12 33681.0 13 31971.5 14 30262.0 15 27977.0 16 25692.0 17 23679.0 18 21666.0 19 19928.5 20 18191.0 21 16665.0 22 15139.0 23 14132.0 24 13125.0 25 13345.0 26 13844.0 27 14123.0 28 14887.5 29 15652.0 30 16389.5 31 17127.0 32 20051.5 33 22976.0 34 25465.5 35 27955.0 36 31599.5 37 35244.0 38 39498.5 39 43753.0 40 52969.0 41 62185.0 42 73155.0 43 84125.0 44 104024.5 45 123924.0 46 141460.5 47 158997.0 48 154922.5 49 150848.0 50 122209.5 51 93571.0 52 78050.0 53 62529.0 54 53659.0 55 44789.0 56 40281.0 57 35773.0 58 32552.5 59 29332.0 60 28308.0 61 27284.0 62 24063.0 63 20842.0 64 17067.0 65 13292.0 66 10830.0 67 8368.0 68 6882.5 69 5397.0 70 4732.5 71 4068.0 72 3323.0 73 2578.0 74 2130.0 75 1208.0 76 734.0 77 511.5 78 289.0 79 230.5 80 172.0 81 110.0 82 48.0 83 35.0 84 22.0 85 20.5 86 19.0 87 9.5 88 0.0 89 2.0 90 4.0 91 2.5 92 1.0 93 2.5 94 4.0 95 2.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1503213.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.95338783326586 #Duplication Level Percentage of deduplicated Percentage of total 1 75.93101241380033 28.818391627134883 2 10.767666266513768 8.173388277443415 3 4.375212256364371 4.9816238285596555 4 2.163797104088705 3.2849372273590456 5 1.2912413501213311 2.450349187375235 6 0.8260140290546061 1.8810018480256794 7 0.6122286428270616 1.6265305786694626 8 0.4716757881595108 1.4321355295663407 9 0.3347159094511597 1.1433242452827743 >10 2.744526614611253 22.95957065438557 >50 0.3944272431790189 9.621514488330357 >100 0.07946465185559759 5.675737865778189 >500 0.004810637983958424 1.2161857274867025 >1k 0.0026725766577546796 1.8270172913670126 >5k 3.5634355436729064E-4 0.9112771122385767 >10k+ 1.7817177718364532E-4 3.9970145109971646 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 59108 3.9321107521023304 No Hit CCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC 6922 0.4604803178258836 Illumina Single End Adapter 2 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC 6554 0.435999422570188 Illumina Single End Adapter 2 (95% over 21bp) CTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGCT 3841 0.25551934423132316 Illumina Single End Adapter 2 (95% over 22bp) CGCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTG 3385 0.22518432184926554 No Hit TCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC 3038 0.20210043420326992 Illumina Single End Adapter 2 (95% over 21bp) ACTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC 2134 0.14196258281427848 Illumina Single End Adapter 2 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCC 1911 0.12712769248270206 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 1616 0.10750306177501126 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 1572 0.10457599821183025 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.995725156714318E-4 0.0 0.0 0.2690237511250901 0.0 2 1.995725156714318E-4 0.0 0.0 1.5842066293998256 0.0 3 1.995725156714318E-4 0.0 0.0 2.3806340152726193 0.0 4 1.995725156714318E-4 0.0 0.0 3.1151939212872692 0.0 5 1.995725156714318E-4 0.0 0.0 5.018916148277057 0.0 6 1.995725156714318E-4 0.0 0.0 6.083702043556037 0.0 7 1.995725156714318E-4 0.0 0.0 7.13524962862881 0.0 8 1.995725156714318E-4 0.0 0.0 8.719456258028636 0.0 9 1.995725156714318E-4 0.0 0.0 9.316045031542435 0.0 10 1.995725156714318E-4 0.0 0.0 10.700080427723815 0.0 11 1.995725156714318E-4 0.0 0.0 12.860386385695174 0.0 12 1.995725156714318E-4 0.0 0.0 14.382193341861733 0.0 13 1.995725156714318E-4 0.0 0.0 14.986232822627265 0.0 14 1.995725156714318E-4 0.0 0.0 15.220730528541198 0.0 15 1.995725156714318E-4 0.0 0.0 15.674425380834252 0.0 16 1.995725156714318E-4 0.0 0.0 16.762960405478132 0.0 17 1.995725156714318E-4 0.0 0.0 18.08925282045858 0.0 18 1.995725156714318E-4 0.0 0.0 19.48619390598671 0.0 19 1.995725156714318E-4 0.0 0.0 20.30996272650649 0.0 20 1.995725156714318E-4 0.0 0.0 21.06414726322883 0.0 21 1.995725156714318E-4 0.0 0.0 22.083630197450393 0.0 22 1.995725156714318E-4 0.0 0.0 23.123336479926664 0.0 23 1.995725156714318E-4 0.0 0.0 24.220453122744416 0.0 24 1.995725156714318E-4 0.0 0.0 25.038168243622163 0.0 25 2.6609668756190905E-4 0.0 0.0 25.78902657174998 0.0 26 2.6609668756190905E-4 0.0 0.0 26.464446488953993 0.0 27 2.6609668756190905E-4 0.0 0.0 27.103876829165262 0.0 28 2.6609668756190905E-4 0.0 0.0 27.78674745362101 0.0 29 2.6609668756190905E-4 0.0 0.0 28.451922648353893 0.0 30 2.6609668756190905E-4 0.0 0.0 29.17510692097527 0.0 31 3.326208594523863E-4 0.0 0.0 29.897759000221527 0.0 32 3.991450313428636E-4 0.0 0.0 30.596063232555867 0.0 33 3.991450313428636E-4 0.0 0.0 31.227377623796496 0.0 34 3.991450313428636E-4 0.0 0.0 31.811592901338667 0.0 35 4.6566920323334084E-4 0.0 0.0 32.40552070797685 0.0 36 4.6566920323334084E-4 0.0 0.0 33.02792086018415 0.0 37 4.6566920323334084E-4 0.0 0.0 33.64712785214071 0.0 38 4.6566920323334084E-4 0.0 0.0 34.24637759253013 0.0 39 4.6566920323334084E-4 0.0 0.0 34.81349615789645 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGCGCG 30 2.165949E-6 45.000004 1 TCCGTTA 30 2.165949E-6 45.000004 20 ACGTAAG 30 2.165949E-6 45.000004 1 CCGTTAG 30 2.165949E-6 45.000004 21 TACCGGT 30 2.165949E-6 45.000004 21 TAGCGTC 20 7.03398E-4 45.0 35 CGCATAG 25 3.8913808E-5 45.0 1 CCGTCCA 20 7.03398E-4 45.0 21 TCGCTAA 45 3.8562575E-10 45.0 14 ACGTGCG 50 2.1827873E-11 45.0 1 TGTTACG 50 2.1827873E-11 45.0 1 CGAATCT 20 7.03398E-4 45.0 25 ACGTAAA 20 7.03398E-4 45.0 33 CGATCGC 20 7.03398E-4 45.0 10 CAATACG 50 2.1827873E-11 45.0 1 CGAAGCA 25 3.8913808E-5 45.0 23 CGTTTTT 38605 0.0 44.551224 1 GCTACGA 310 0.0 44.274197 10 TACGAAT 330 0.0 41.590908 12 CGTAAGG 125 0.0 41.399998 2 >>END_MODULE