FastQCFastQC Report
Sat 14 Jan 2017
SRR2934894.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934894.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1470201
Sequences flagged as poor quality0
Sequence length51
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT568593.8674303717654936No Hit
CCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGC35000.23806268666665303No Hit
GCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGC34160.2323491821866534No Hit
CTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGCT17180.11685477019808856No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA14970.10182281198285131No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATTCGA207.03393E-445.024
TGTTACG351.2122291E-745.01
ACTCGAG253.8913393E-545.01
TATAGCG207.03393E-445.01
ACGTAAG253.8913393E-545.01
TCGGTAG207.03393E-445.01
TCGAACG302.165918E-644.9999962
CGTTTTT413150.044.5044171
TCGACGT1250.041.39999826
GTTAGCG1200.041.2499961
TAACGCC603.6379788E-1241.24999612
GTACGAG501.0822987E-940.51
GTTTTTT460050.040.114122
AATACGG850.039.7058832
CGGGTAT800.039.3756
TCTAGCG403.4590994E-739.3751
CGAATAT3050.039.09836214
TTCGACG1450.038.79310225
CGCAGTA356.24948E-638.57142637
TGCTCGC356.24948E-638.57142611