Basic Statistics
Measure | Value |
---|---|
Filename | SRR2934894.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1470201 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 38 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 56859 | 3.8674303717654936 | No Hit |
CCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGC | 3500 | 0.23806268666665303 | No Hit |
GCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGC | 3416 | 0.2323491821866534 | No Hit |
CTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGCT | 1718 | 0.11685477019808856 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA | 1497 | 0.10182281198285131 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATTCGA | 20 | 7.03393E-4 | 45.0 | 24 |
TGTTACG | 35 | 1.2122291E-7 | 45.0 | 1 |
ACTCGAG | 25 | 3.8913393E-5 | 45.0 | 1 |
TATAGCG | 20 | 7.03393E-4 | 45.0 | 1 |
ACGTAAG | 25 | 3.8913393E-5 | 45.0 | 1 |
TCGGTAG | 20 | 7.03393E-4 | 45.0 | 1 |
TCGAACG | 30 | 2.165918E-6 | 44.999996 | 2 |
CGTTTTT | 41315 | 0.0 | 44.504417 | 1 |
TCGACGT | 125 | 0.0 | 41.399998 | 26 |
GTTAGCG | 120 | 0.0 | 41.249996 | 1 |
TAACGCC | 60 | 3.6379788E-12 | 41.249996 | 12 |
GTACGAG | 50 | 1.0822987E-9 | 40.5 | 1 |
GTTTTTT | 46005 | 0.0 | 40.11412 | 2 |
AATACGG | 85 | 0.0 | 39.705883 | 2 |
CGGGTAT | 80 | 0.0 | 39.375 | 6 |
TCTAGCG | 40 | 3.4590994E-7 | 39.375 | 1 |
CGAATAT | 305 | 0.0 | 39.098362 | 14 |
TTCGACG | 145 | 0.0 | 38.793102 | 25 |
CGCAGTA | 35 | 6.24948E-6 | 38.571426 | 37 |
TGCTCGC | 35 | 6.24948E-6 | 38.571426 | 11 |