SRR2934889.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934889.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	870754
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	31799	3.6518924977663034	No Hit
GCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC	4603	0.528622320425746	TruSeq Adapter, Index 23 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC	4492	0.5158747476325115	TruSeq Adapter, Index 23 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGCT	2602	0.2988214811531156	TruSeq Adapter, Index 20 (95% over 24bp)
TCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC	1520	0.1745613571686148	TruSeq Adapter, Index 23 (95% over 22bp)
CGCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTG	1409	0.1618137843753804	TruSeq Adapter, Index 20 (95% over 22bp)
ACTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC	1091	0.125293710967736	TruSeq Adapter, Index 20 (95% over 23bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCC	974	0.11185708018567816	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAC	30	2.164892E-6	45.000004	35
GTACCGG	40	6.8121153E-9	45.000004	2
GTCGATT	20	7.032343E-4	45.000004	8
TCACCGA	20	7.032343E-4	45.000004	24
CAACGAA	20	7.032343E-4	45.000004	36
GGATGCG	20	7.032343E-4	45.000004	15
ACGTTAC	20	7.032343E-4	45.000004	29
CCGATAT	20	7.032343E-4	45.000004	11
TTAGCGA	35	1.2114651E-7	45.000004	27
CGGTTGT	20	7.032343E-4	45.000004	14
TAGCGTA	20	7.032343E-4	45.000004	16
CTATACG	20	7.032343E-4	45.000004	1
GCACGTA	20	7.032343E-4	45.000004	18
GCGCCTA	20	7.032343E-4	45.000004	9
CACGAGA	20	7.032343E-4	45.000004	11
GTTCGCC	20	7.032343E-4	45.000004	32
TCGCTAG	20	7.032343E-4	45.000004	15
CGTACAG	20	7.032343E-4	45.000004	1
AGTTACG	35	1.2114651E-7	45.000004	1
TAAGGCG	40	6.8121153E-9	45.000004	1