SRR2934888.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934888.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1791014
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	64341	3.5924342299948524	No Hit
GCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC	4152	0.23182398350878328	No Hit
CCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC	3507	0.19581086468335815	No Hit
CTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGCT	2478	0.13835737744093568	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	1847	0.1031259387140469	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGCGA	20	7.0343434E-4	45.0	1
ATCGTTC	20	7.0343434E-4	45.0	22
ATACGGT	20	7.0343434E-4	45.0	23
TCGAATC	20	7.0343434E-4	45.0	25
TTACGAG	60	0.0	44.999996	1
CGTTTTT	50165	0.0	44.520084	1
GCGTAAG	80	0.0	42.1875	1
TATACGG	75	0.0	42.000004	2
GACGTAG	55	6.184564E-11	40.909092	1
TTCGTAC	55	6.184564E-11	40.909092	33
CGTACAT	55	6.184564E-11	40.909092	35
GTTTTTT	56395	0.0	39.741554	2
TCTAGCG	85	0.0	39.705883	1
AGTACGG	210	0.0	39.642857	2
CCGCTAG	40	3.4596633E-7	39.375	3
ATATGCG	70	0.0	38.571426	1
CCCGTAG	35	6.250244E-6	38.571426	44
TACGGGA	285	0.0	37.894737	4
TACGAGG	180	0.0	37.5	2
TGCACGG	235	0.0	37.340427	2