SRR2934887.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934887.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	675238
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	25355	3.754972320870567	No Hit
GCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGC	3346	0.49552898385458166	No Hit
CCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGC	3006	0.4451763674437754	No Hit
CTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGCT	1866	0.2763470065369544	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGC	1239	0.18349085803820284	No Hit
CGCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTG	936	0.13861779106033723	No Hit
ACTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGC	890	0.1318053782518164	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCC	852	0.1261777328882557	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGGT	30	2.1641663E-6	45.000004	28
GCTTACG	30	2.1641663E-6	45.000004	1
CAATCGA	30	2.1641663E-6	45.000004	12
TTCGAAG	30	2.1641663E-6	45.000004	1
GTTATTG	30	2.1641663E-6	45.000004	1
GTCATCG	35	1.2109376E-7	45.0	43
TGTTTCG	35	1.2109376E-7	45.0	1
CCGATTC	20	7.0312177E-4	45.0	11
TCCGAAC	20	7.0312177E-4	45.0	34
GACGTAG	20	7.0312177E-4	45.0	1
CGCATCG	20	7.0312177E-4	45.0	21
TTCGTCA	25	3.8890903E-5	45.0	44
CGATTAC	25	3.8890903E-5	45.0	12
TAACGCC	20	7.0312177E-4	45.0	12
CGTTAAG	20	7.0312177E-4	45.0	1
TAACCGA	20	7.0312177E-4	45.0	18
TCTACGG	25	3.8890903E-5	45.0	2
TTAAGCG	35	1.2109376E-7	45.0	1
GTCACGA	25	3.8890903E-5	45.0	25
ACTACGG	35	1.2109376E-7	45.0	2