SRR2934884.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934884.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	574664
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19875	3.4585427310567565	No Hit
GCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC	4880	0.8491918756003507	No Hit
CCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC	4674	0.8133448415073852	No Hit
CTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGCT	2506	0.4360809098882129	TruSeq Adapter, Index 27 (95% over 23bp)
TCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC	2041	0.35516406108613036	No Hit
CGCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTG	1512	0.2631102696532234	TruSeq Adapter, Index 27 (95% over 21bp)
ACTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC	1294	0.22517505881697827	TruSeq Adapter, Index 27 (95% over 22bp)
GAATGATACCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCG	1143	0.19889883479737724	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGC	1124	0.1955925549538513	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTC	1075	0.18706583325212645	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCC	982	0.17088246349170993	No Hit
GCCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTG	866	0.15069675497334095	No Hit
AGCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTG	690	0.12007016273857418	TruSeq Adapter, Index 27 (95% over 21bp)
ACCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTG	689	0.11989614800996756	TruSeq Adapter, Index 27 (95% over 21bp)
CGTTCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTC	628	0.10928124956496318	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTCA	70	0.0	45.000004	6
AGGGTTA	35	1.210501E-7	45.000004	6
TACGGGT	35	1.210501E-7	45.000004	4
CGTTCGG	30	2.1635988E-6	45.000004	2
TTGCGAG	35	1.210501E-7	45.000004	1
AGCGAAA	30	2.1635988E-6	45.000004	19
TAGGCTA	30	2.1635988E-6	45.000004	24
ATAACGG	35	1.210501E-7	45.000004	2
TGTGTCG	35	1.210501E-7	45.000004	1
TATCGAG	30	2.1635988E-6	45.000004	1
GCGTAAG	30	2.1635988E-6	45.000004	1
GTTATCC	30	2.1635988E-6	45.000004	12
GATAGGC	30	2.1635988E-6	45.000004	22
CTAGCGA	30	2.1635988E-6	45.000004	17
GTTGATC	55	1.8189894E-12	45.0	16
CTTCGGA	20	7.0303393E-4	45.0	34
TAGAGTC	25	3.8883627E-5	45.0	13
TAATACG	45	3.8380676E-10	45.0	1
GATACGA	20	7.0303393E-4	45.0	29
GCCCATC	20	7.0303393E-4	45.0	21