##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934883.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1636000 Sequences flagged as poor quality 0 Sequence length 51 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.594731662591684 34.0 31.0 34.0 31.0 34.0 2 32.75331295843521 34.0 31.0 34.0 31.0 34.0 3 32.812963936430315 34.0 31.0 34.0 31.0 34.0 4 36.205797677261614 37.0 37.0 37.0 35.0 37.0 5 36.092633863080685 37.0 35.0 37.0 35.0 37.0 6 36.08520232273839 37.0 35.0 37.0 35.0 37.0 7 36.23969926650367 37.0 37.0 37.0 35.0 37.0 8 36.254349633251834 37.0 37.0 37.0 35.0 37.0 9 38.03464914425428 39.0 39.0 39.0 35.0 39.0 10 37.51496699266504 39.0 37.0 39.0 34.0 39.0 11 37.42448838630807 39.0 37.0 39.0 34.0 39.0 12 37.435924205378974 39.0 37.0 39.0 35.0 39.0 13 37.46025122249389 39.0 37.0 39.0 35.0 39.0 14 38.75187163814181 40.0 38.0 41.0 35.0 41.0 15 38.78897738386308 40.0 38.0 41.0 35.0 41.0 16 38.86823655256724 40.0 38.0 41.0 35.0 41.0 17 38.86851894865526 40.0 38.0 41.0 35.0 41.0 18 38.39322371638142 39.0 38.0 41.0 35.0 41.0 19 37.935117970660144 39.0 37.0 41.0 35.0 41.0 20 37.416097799511 38.0 35.0 41.0 34.0 41.0 21 37.37139547677262 38.0 35.0 41.0 34.0 41.0 22 37.19420782396088 38.0 35.0 41.0 34.0 41.0 23 37.08296760391198 38.0 35.0 40.0 34.0 41.0 24 36.89910696821516 38.0 35.0 40.0 33.0 41.0 25 36.77053850855746 38.0 35.0 40.0 33.0 41.0 26 36.91073716381418 38.0 35.0 40.0 33.0 41.0 27 36.95885085574572 38.0 35.0 40.0 34.0 41.0 28 36.886017114914424 38.0 35.0 40.0 33.0 41.0 29 36.791260391198044 38.0 35.0 40.0 33.0 41.0 30 36.520052567237165 38.0 35.0 40.0 33.0 41.0 31 36.02708985330074 38.0 35.0 41.0 31.0 41.0 32 35.36077444987775 38.0 35.0 41.0 25.0 41.0 33 34.4644706601467 38.0 35.0 41.0 18.0 41.0 34 33.687410146699264 38.0 34.0 41.0 12.0 41.0 35 33.22808190709046 38.0 33.0 41.0 10.0 41.0 36 33.02032579462103 38.0 33.0 41.0 10.0 41.0 37 32.783581907090465 38.0 33.0 41.0 9.0 41.0 38 32.67941503667482 38.0 32.0 41.0 8.0 41.0 39 32.64251100244499 38.0 32.0 41.0 8.0 41.0 40 32.53750794621027 38.0 31.0 41.0 8.0 41.0 41 32.41754951100245 38.0 31.0 41.0 8.0 41.0 42 32.29544498777506 38.0 31.0 40.0 8.0 41.0 43 32.19449511002445 38.0 31.0 40.0 8.0 41.0 44 32.08669070904646 38.0 30.0 40.0 8.0 41.0 45 32.05130012224939 37.0 30.0 40.0 8.0 41.0 46 31.993911369193153 37.0 30.0 40.0 8.0 41.0 47 31.983559290953544 37.0 30.0 40.0 8.0 41.0 48 31.937295843520783 37.0 30.0 40.0 8.0 41.0 49 31.820816014669926 37.0 29.0 40.0 8.0 41.0 50 31.745398533007336 37.0 29.0 40.0 8.0 41.0 51 31.21110391198044 35.0 27.0 40.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 4.0 8 3.0 9 9.0 10 17.0 11 12.0 12 18.0 13 36.0 14 45.0 15 69.0 16 109.0 17 232.0 18 508.0 19 926.0 20 1597.0 21 2735.0 22 4243.0 23 7533.0 24 14950.0 25 32867.0 26 60646.0 27 77470.0 28 71536.0 29 56977.0 30 45275.0 31 39251.0 32 38040.0 33 45239.0 34 82709.0 35 105345.0 36 107192.0 37 146219.0 38 289416.0 39 404506.0 40 266.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.309718826405867 15.695537897310514 19.716687041564793 35.278056234718825 2 49.431540342298284 18.16955990220049 19.019682151589244 13.37921760391198 3 23.597860635696822 17.949877750611247 45.19596577017115 13.256295843520782 4 21.81075794621027 19.432273838630806 44.28539119804401 14.471577017114914 5 19.396271393643033 22.148166259168704 43.58832518337408 14.867237163814181 6 20.526772616136917 24.944743276283617 42.55971882640587 11.968765281173594 7 60.77762836185819 4.558618581907091 30.734596577017115 3.929156479217604 8 61.14596577017115 3.8378973105134473 30.669865525672375 4.346271393643032 9 56.58777506112469 5.607518337408313 32.61839853300734 5.186308068459658 10 30.623533007334963 18.805134474327627 40.10268948655257 10.468643031784842 11 22.704462102689487 18.533374083129583 44.60984107579462 14.152322738386308 12 21.29529339853301 16.61790953545232 46.79028117359413 15.296515892420537 13 18.621210268948655 18.23557457212714 47.25189486552567 15.891320293398534 14 15.02817848410758 20.987591687041565 46.537041564792176 17.44718826405868 15 14.537347188264057 19.85281173594132 50.13319070904646 15.476650366748165 16 16.113997555012226 19.674022004889977 48.16369193154034 16.048288508557455 17 16.18416870415648 19.436552567237165 46.153239608801954 18.2260391198044 18 16.88875305623472 20.062958435207822 46.84559902200489 16.20268948655257 19 17.987163814180928 20.874022004889977 45.12970660146699 16.009107579462103 20 19.507701711491443 20.32805623471883 45.2841075794621 14.880134474327628 21 18.269559902200488 20.967542787286064 45.472555012224944 15.29034229828851 22 16.909046454767726 20.011491442542788 45.05709046454768 18.02237163814181 23 16.62988997555012 20.20421760391198 45.67805623471883 17.487836185819074 24 17.396577017114915 18.37976772616137 46.46815403422983 17.755501222493887 25 16.24614914425428 19.79046454767726 44.79248166259169 19.17090464547677 26 15.244926650366747 21.098899755501222 46.09003667481662 17.566136919315404 27 16.937469437652812 20.69559902200489 45.68649144254279 16.68044009779951 28 14.573533007334962 21.41216381418093 46.69963325183374 17.314669926650367 29 16.176100244498777 19.754095354523226 46.89028117359413 17.179523227383864 30 17.4929706601467 20.09981662591687 45.703789731051344 16.703422982885087 31 16.652017114914425 23.09743276283619 42.91234718826406 17.33820293398533 32 17.736674816625918 22.33551344743276 42.59211491442543 17.335696821515892 33 17.700916870415647 23.34993887530562 40.43661369193154 18.512530562347187 34 16.347799511002446 24.705012224938873 39.97793398533007 18.969254278728606 35 16.652506112469435 24.3619804400978 38.0468826405868 20.938630806845964 36 17.990097799511002 27.030073349633255 36.03691931540342 18.942909535452323 37 17.977200488997553 27.952567237163816 36.25171149144254 17.81852078239609 38 16.983129584352078 26.85 35.53129584352078 20.635574572127137 39 17.87078239608802 25.617542787286062 36.516992665036675 19.99468215158924 40 18.367848410757944 25.32127139364303 36.98196821515892 19.328911980440097 41 16.913080684596576 26.441381418092906 34.51253056234719 22.133007334963324 42 17.87389975550122 25.49700488997555 34.44926650366748 22.179828850855746 43 18.969682151589243 25.197432762836186 34.64443765281174 21.188447432762835 44 17.992298288508557 25.571699266503668 35.02933985330073 21.40666259168704 45 18.132579462102687 24.453973105134473 35.18997555012225 22.223471882640585 46 18.151650366748164 25.273899755501223 35.966259168704156 20.608190709046458 47 16.663814180929094 24.747616136919316 37.704889975550124 20.883679706601466 48 16.741075794621025 23.386002444987774 37.48056234718826 22.392359413202932 49 17.161002444987776 22.5158924205379 38.73746943765281 21.585635696821516 50 16.609107579462105 22.45874083129584 38.45385085574572 22.478300733496333 51 16.1450488997555 22.09645476772616 36.87133251833741 24.88716381418093 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 297.0 1 731.5 2 1166.0 3 61546.0 4 121926.0 5 84508.0 6 47090.0 7 44363.0 8 41636.0 9 40234.0 10 38832.0 11 37021.0 12 35210.0 13 32835.0 14 30460.0 15 27910.0 16 25360.0 17 23064.0 18 20768.0 19 19213.0 20 17658.0 21 16191.0 22 14724.0 23 13886.5 24 13049.0 25 12787.5 26 14296.5 27 16067.0 28 17655.0 29 19243.0 30 20608.0 31 21973.0 32 24494.5 33 27016.0 34 30097.5 35 33179.0 36 36487.5 37 39796.0 38 44565.0 39 49334.0 40 56657.5 41 63981.0 42 73929.0 43 83877.0 44 98038.0 45 112199.0 46 123628.5 47 135058.0 48 133441.5 49 131825.0 50 112525.5 51 93226.0 52 82355.5 53 71485.0 54 64554.5 55 57624.0 56 55235.5 57 52847.0 58 50831.0 59 48815.0 60 49526.5 61 50238.0 62 45446.0 63 40654.0 64 33577.0 65 26500.0 66 21403.0 67 16306.0 68 13068.0 69 9830.0 70 7726.0 71 5622.0 72 4709.0 73 3796.0 74 3076.0 75 1718.5 76 1081.0 77 919.0 78 757.0 79 565.0 80 373.0 81 270.5 82 168.0 83 99.5 84 31.0 85 28.0 86 25.0 87 16.0 88 7.0 89 4.0 90 1.0 91 3.0 92 5.0 93 4.0 94 3.0 95 1.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1636000.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.05512205516149 #Duplication Level Percentage of deduplicated Percentage of total 1 75.63795531125712 24.245838895051975 2 10.46783916204873 6.7109572398654285 3 4.024694863188277 3.8703625522284506 4 1.9883184444381263 2.5494316168397186 5 1.1897020928134467 1.9068022897208052 6 0.7683604168773934 1.4777932167215768 7 0.5421724906105156 1.2165583753029683 8 0.4088499141877754 1.0484587121225155 9 0.31711431645406374 0.9148624307436707 >10 3.8792470307487568 30.69033354801065 >50 0.6858475096580534 13.916917228125842 >100 0.08190314307208449 4.997039756834534 >500 0.0054602080506806075 1.1878750562922271 >1k 0.0019500743038145026 0.9637146630983143 >5k 3.900148607629005E-4 0.6569787318650375 >10k+ 1.9500743038145026E-4 3.646075687176395 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 58328 3.565281173594132 No Hit GCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTGC 5461 0.33380195599022006 Illumina PCR Primer Index 2 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTGC 5049 0.30861858190709046 RNA PCR Primer, Index 10 (95% over 23bp) CTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTGCT 2850 0.17420537897310512 TruSeq Adapter, Index 10 (95% over 24bp) TCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTGC 2018 0.12334963325183375 Illumina PCR Primer Index 2 (95% over 22bp) CGCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTG 1781 0.10886308068459659 TruSeq Adapter, Index 10 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.8337408312958436E-4 0.0 0.0 0.18453545232273838 0.0 2 1.8337408312958436E-4 0.0 0.0 1.0877139364303179 0.0 3 1.8337408312958436E-4 0.0 0.0 1.5789731051344744 0.0 4 1.8337408312958436E-4 0.0 0.0 2.0770171149144256 0.0 5 1.8337408312958436E-4 0.0 0.0 3.300305623471883 0.0 6 1.8337408312958436E-4 0.0 0.0 3.9704156479217603 0.0 7 1.8337408312958436E-4 0.0 0.0 4.694804400977995 0.0 8 1.8337408312958436E-4 0.0 0.0 5.7831295843520785 0.0 9 1.8337408312958436E-4 0.0 0.0 6.19419315403423 0.0 10 1.8337408312958436E-4 0.0 0.0 7.1375916870415645 0.0 11 1.8337408312958436E-4 0.0 0.0 8.489364303178483 0.0 12 1.8337408312958436E-4 0.0 0.0 9.533190709046455 0.0 13 1.8337408312958436E-4 0.0 0.0 9.931601466992666 0.0 14 1.8337408312958436E-4 0.0 0.0 10.094132029339853 0.0 15 1.8337408312958436E-4 0.0 0.0 10.413447432762837 0.0 16 1.8337408312958436E-4 0.0 0.0 11.115892420537897 0.0 17 1.8337408312958436E-4 0.0 0.0 11.952444987775062 0.0 18 1.8337408312958436E-4 0.0 0.0 12.88416870415648 0.0 19 1.8337408312958436E-4 0.0 0.0 13.432457212713937 0.0 20 1.8337408312958436E-4 0.0 0.0 13.95776283618582 0.0 21 1.8337408312958436E-4 0.0 0.0 14.617542787286064 0.0 22 1.8337408312958436E-4 0.0 0.0 15.315525672371638 0.0 23 1.8337408312958436E-4 0.0 0.0 15.999205378973105 0.0 24 1.8337408312958436E-4 0.0 0.0 16.537041564792176 0.0 25 1.8337408312958436E-4 0.0 0.0 17.013691931540343 0.0 26 1.8337408312958436E-4 0.0 0.0 17.456601466992666 0.0 27 1.8337408312958436E-4 0.0 0.0 17.8739608801956 0.0 28 1.8337408312958436E-4 0.0 0.0 18.30690709046455 0.0 29 1.8337408312958436E-4 0.0 0.0 18.75281173594132 0.0 30 1.8337408312958436E-4 0.0 0.0 19.238508557457212 0.0 31 1.8337408312958436E-4 0.0 0.0 19.708557457212713 0.0 32 1.8337408312958436E-4 0.0 0.0 20.166136919315402 0.0 33 1.8337408312958436E-4 0.0 0.0 20.60690709046455 0.0 34 2.4449877750611245E-4 0.0 0.0 21.04486552567237 0.0 35 2.4449877750611245E-4 0.0 0.0 21.50262836185819 0.0 36 2.4449877750611245E-4 0.0 0.0 21.945660146699268 0.0 37 2.4449877750611245E-4 0.0 0.0 22.37713936430318 0.0 38 2.4449877750611245E-4 0.0 0.0 22.79187041564792 0.0 39 3.056234718826406E-4 0.0 0.0 23.224938875305625 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGACGGT 80 0.0 45.0 28 GTAATCG 40 6.8175723E-9 45.0 1 CTCGGTA 20 7.034165E-4 45.0 45 TGTTACG 50 2.1827873E-11 45.0 1 GCTCGAT 20 7.034165E-4 45.0 29 TCGACTT 20 7.034165E-4 45.0 38 CGAATTG 30 2.1660671E-6 44.999996 1 CGTTTTT 41425 0.0 44.48944 1 GCGATAC 80 0.0 42.1875 9 AAGCGCC 45 1.9292202E-8 40.000004 42 GTTTTTT 46660 0.0 39.695667 2 TCGTTCA 70 0.0 38.571426 16 GCATCGC 35 6.249913E-6 38.571426 22 TACGGGA 350 0.0 37.928574 4 GCGATCA 155 0.0 37.741936 9 TAGAACG 30 1.14013324E-4 37.499996 1 CCGTCCC 30 1.14013324E-4 37.499996 39 TTAAGCG 60 1.5643309E-10 37.499996 1 CTCGACA 30 1.14013324E-4 37.499996 35 TCGACAT 30 1.14013324E-4 37.499996 36 >>END_MODULE