##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934880.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2432568 Sequences flagged as poor quality 0 Sequence length 51 %GC 37 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.70120547503708 34.0 31.0 34.0 31.0 34.0 2 32.84945909014671 34.0 31.0 34.0 31.0 34.0 3 32.89266610429801 34.0 31.0 34.0 31.0 34.0 4 36.26876617632066 37.0 37.0 37.0 35.0 37.0 5 36.16991755215065 37.0 37.0 37.0 35.0 37.0 6 36.16507000009866 37.0 37.0 37.0 35.0 37.0 7 36.30190810698817 37.0 37.0 37.0 35.0 37.0 8 36.31377457896347 37.0 37.0 37.0 35.0 37.0 9 38.08773814339414 39.0 39.0 39.0 37.0 39.0 10 37.667489665242655 39.0 38.0 39.0 35.0 39.0 11 37.58886699159078 39.0 37.0 39.0 35.0 39.0 12 37.56618643343167 39.0 37.0 39.0 35.0 39.0 13 37.575573632474 39.0 37.0 39.0 35.0 39.0 14 38.93995727971428 40.0 38.0 41.0 35.0 41.0 15 38.98941283450247 40.0 38.0 41.0 35.0 41.0 16 39.06526600695232 41.0 38.0 41.0 35.0 41.0 17 39.06821022063926 41.0 38.0 41.0 35.0 41.0 18 38.527991817700475 39.0 38.0 41.0 35.0 41.0 19 37.99325363155316 38.0 37.0 41.0 35.0 41.0 20 37.39463233915763 38.0 35.0 41.0 35.0 41.0 21 37.354977127052564 38.0 35.0 41.0 35.0 41.0 22 37.170984737117315 38.0 35.0 41.0 34.0 41.0 23 37.058618299673434 38.0 35.0 40.0 34.0 41.0 24 36.85981563516415 38.0 35.0 40.0 33.0 41.0 25 36.73589227515942 37.0 35.0 40.0 33.0 41.0 26 36.84090311144437 38.0 35.0 40.0 34.0 41.0 27 36.86296045989259 38.0 35.0 40.0 34.0 41.0 28 36.78583908034636 38.0 35.0 40.0 33.0 41.0 29 36.6392655827093 38.0 35.0 40.0 33.0 41.0 30 36.33037103176561 38.0 35.0 40.0 33.0 41.0 31 35.772333188630284 38.0 35.0 41.0 31.0 41.0 32 34.9700616796735 38.0 35.0 41.0 22.0 41.0 33 33.92526046548339 38.0 34.0 41.0 15.0 41.0 34 33.04918423657632 38.0 33.0 41.0 10.0 41.0 35 32.52016798708196 38.0 32.0 41.0 8.0 41.0 36 32.26479218669324 38.0 31.0 41.0 8.0 41.0 37 32.003441219320486 38.0 30.0 41.0 7.0 41.0 38 31.854019702635238 37.0 29.0 41.0 7.0 41.0 39 31.764432895606618 37.0 29.0 41.0 7.0 41.0 40 31.624632487149384 37.0 28.0 40.0 7.0 41.0 41 31.480652956053028 37.0 27.0 40.0 7.0 41.0 42 31.351297065487994 37.0 25.0 40.0 7.0 41.0 43 31.249607410769194 37.0 24.0 40.0 7.0 41.0 44 31.135463427949393 37.0 24.0 40.0 7.0 41.0 45 31.082842905110976 36.0 23.0 40.0 7.0 41.0 46 31.025188196177865 36.0 23.0 40.0 7.0 41.0 47 31.002237553071488 36.0 23.0 40.0 7.0 41.0 48 30.933853442123713 36.0 23.0 40.0 7.0 41.0 49 30.799700974443468 36.0 24.0 40.0 7.0 41.0 50 30.701054605667757 35.0 24.0 40.0 7.0 41.0 51 30.14280176340394 35.0 23.0 40.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 5.0 8 5.0 9 15.0 10 14.0 11 21.0 12 25.0 13 33.0 14 45.0 15 90.0 16 195.0 17 392.0 18 723.0 19 1454.0 20 2701.0 21 4292.0 22 6957.0 23 12432.0 24 25735.0 25 57268.0 26 104696.0 27 134241.0 28 123339.0 29 95033.0 30 71011.0 31 59788.0 32 55847.0 33 64916.0 34 109736.0 35 143536.0 36 155555.0 37 209422.0 38 402054.0 39 590612.0 40 380.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.120994767669394 15.373177646010308 17.515440472784316 37.99038711353598 2 52.71120889529091 17.46935748558725 17.55757701326335 12.2618566058585 3 23.147801007001654 17.82712754586922 46.7757119225444 12.249359524584719 4 20.665938218376628 19.378985500097016 46.57078445494638 13.384291826579977 5 18.794500297627856 22.18182595512232 45.14032084611818 13.883352901131643 6 19.69630448151912 24.53625140181076 44.955413373850185 10.812030742819934 7 58.63387991620378 4.704082270259248 33.28079626139947 3.381241552137494 8 59.437721782083784 4.218957085680647 33.182833943388225 3.160487188847341 9 54.70708321411776 5.964232037912199 34.68145597574251 4.647228772227539 10 29.33204744944437 19.15765561332715 40.533666479210446 10.976630458018029 11 22.836566130936525 19.20094320076561 44.55390352910998 13.408587139187885 12 20.898244160081035 17.55235619312595 47.40007268039372 14.149326966399295 13 18.70410200249284 17.800859009902293 48.67674819367845 14.818290793926419 14 15.13306102850979 20.369666952784055 48.168314308171446 16.328957710534713 15 14.924844855313395 19.583830750055085 50.77671004469351 14.714614349938007 16 16.996030532342775 18.637916802325773 49.71026503678417 14.655787628547278 17 16.814247330393233 19.031163774250093 47.75841826415541 16.396170631201265 18 17.102173505529958 19.54740833555321 47.94377793344318 15.406640225473655 19 17.982601103031858 20.14171854599748 47.00719568784922 14.868484663121443 20 18.913633657928575 19.743209645115776 47.61215308266819 13.731003614287452 21 18.55142384508881 19.435140148189074 47.48849775216972 14.524938254552392 22 17.407406493878074 18.937887861716508 47.21409637880626 16.44060926559915 23 16.966062202577685 19.409734897441716 47.98303685652364 15.641166043456955 24 16.711845259824184 18.724861956582508 48.36206017673504 16.20123260685827 25 16.567841063435843 19.68993261442229 47.184333593141076 16.55789272900079 26 16.11778170229979 20.60193178566848 47.689314337769794 15.590972174261934 27 16.708885424785656 20.782851702398453 47.27645845871524 15.231804414100655 28 15.016599741507742 21.197393043072175 48.123629020853684 15.6623781945664 29 16.052418678532316 19.70711610117374 47.750936458919135 16.48952876137481 30 17.113683975124232 20.074505625330925 46.51072446895627 16.30108593058858 31 17.22015581887125 21.337450792742484 44.94086085157743 16.50153253680884 32 17.732371715816374 22.203613629711484 43.673229278688204 16.390785375783945 33 18.211741665597838 23.430218600261124 41.277695012020224 17.08034472212082 34 17.450652972496556 24.603217669557438 40.170223401771295 17.77590595617471 35 18.691399377119158 24.903928687707804 37.39328150333311 19.011390431839935 36 19.256727869477853 26.81758536657557 35.92565552124339 18.000031242703184 37 19.07552019100802 27.410086788940742 36.186984289853356 17.32740873019788 38 18.89793008869639 27.129231330840494 34.64573241118028 19.327106169282832 39 19.606070621664017 25.462556442409834 35.53170969937942 19.399663236546726 40 20.1776476546596 25.412198137934887 36.6682041365339 17.741950070871606 41 18.585297512751957 26.77158459701846 35.40793104242101 19.23518684780857 42 19.061913171594792 26.810966846558866 34.52203597186184 19.605084009984513 43 20.008032663424004 26.5532556541071 34.19263099736575 19.246080685103152 44 19.001894294424655 27.127052563381575 34.057629632552924 19.81342350964084 45 18.89608019179731 25.88190751502116 34.67212427360715 20.549888019574375 46 19.2126181056398 26.18915483554828 35.09903936909472 19.499187689717203 47 18.314020409706945 25.815968967773973 36.60608870954481 19.263921912974272 48 18.42452091781196 24.832687102683256 36.45949465749776 20.283297322007034 49 18.64560415166195 24.157926931539013 37.16389428784725 20.032574628951792 50 17.982148906012082 23.919701319757554 37.35024056881452 20.74790920541584 51 17.533610571215274 23.66786868856287 36.293415024780394 22.50510571544146 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 537.0 1 1218.5 2 1900.0 3 96633.0 4 191366.0 5 135550.0 6 79734.0 7 76030.0 8 72326.0 9 70058.5 10 67791.0 11 64528.5 12 61266.0 13 57453.5 14 53641.0 15 49591.5 16 45542.0 17 41978.0 18 38414.0 19 35386.5 20 32359.0 21 29556.5 22 26754.0 23 25132.0 24 23510.0 25 22579.5 26 23494.0 27 25339.0 28 27078.0 29 28817.0 30 33350.0 31 37883.0 32 40447.0 33 43011.0 34 47880.5 35 52750.0 36 56670.5 37 60591.0 38 64077.0 39 67563.0 40 75331.5 41 83100.0 42 90329.0 43 97558.0 44 103664.5 45 109771.0 46 115444.0 47 121117.0 48 131867.0 49 142617.0 50 149981.5 51 157346.0 52 152809.5 53 148273.0 54 131213.0 55 114153.0 56 103767.5 57 93382.0 58 87621.5 59 81861.0 60 78050.5 61 74240.0 62 66487.0 63 58734.0 64 50749.0 65 42764.0 66 34151.0 67 25538.0 68 21511.0 69 17484.0 70 15125.5 71 12767.0 72 10296.5 73 7826.0 74 6499.0 75 3996.5 76 2821.0 77 2271.0 78 1721.0 79 1216.0 80 711.0 81 592.5 82 474.0 83 346.5 84 219.0 85 165.0 86 111.0 87 79.0 88 47.0 89 27.0 90 7.0 91 7.5 92 8.0 93 4.5 94 1.0 95 1.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2432568.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.372007247167737 #Duplication Level Percentage of deduplicated Percentage of total 1 78.21597047447149 23.755760220949057 2 9.212282885884214 5.595910451460693 3 3.5431579407635105 3.2283845596418774 4 1.7425217534505808 2.1169553329659387 5 1.0507893060064706 1.595729020863744 6 0.696731584339986 1.269668203734283 7 0.4648778541196632 0.9883491488059136 8 0.3467890145220761 0.8426142769842122 9 0.26346047685462176 0.7201641161133755 >10 3.2101380661829797 24.28773257238226 >50 1.1274644258989934 23.13960320735615 >100 0.11817883758363493 6.307566191824611 >500 0.004721289406137459 0.9461963629375805 >1k 0.002777229062433799 1.434245585666071 >5k 0.0 0.0 >10k+ 1.3886145312168996E-4 3.771120748314094 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 89416 3.675786247290929 No Hit CCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTGC 3523 0.1448263727879344 TruSeq Adapter, Index 22 (95% over 24bp) GCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTGC 3436 0.14124990544971405 TruSeq Adapter, Index 22 (95% over 24bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 2728 0.11214486090419672 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.2332645993863274E-4 0.0 0.0 0.08752067773644971 0.0 2 1.2332645993863274E-4 0.0 0.0 0.49137372521549244 0.0 3 1.2332645993863274E-4 0.0 0.0 0.7225286199604698 0.0 4 1.2332645993863274E-4 0.0 0.0 0.9758411686744214 0.0 5 1.2332645993863274E-4 0.0 0.0 1.614220034136764 0.0 6 1.2332645993863274E-4 0.0 0.0 1.9719489855987582 0.0 7 1.2332645993863274E-4 0.0 0.0 2.3277458225217136 0.0 8 1.2332645993863274E-4 0.0 0.0 2.899775052537072 0.0 9 1.2332645993863274E-4 0.0 0.0 3.1003038763972888 0.0 10 1.2332645993863274E-4 0.0 0.0 3.6012148478480355 0.0 11 1.2332645993863274E-4 0.0 0.0 4.365098940707926 0.0 12 1.2332645993863274E-4 0.0 0.0 4.998256986032867 0.0 13 1.2332645993863274E-4 0.0 0.0 5.2145715967652295 0.0 14 1.2332645993863274E-4 0.0 0.0 5.309532970917976 0.0 15 1.2332645993863274E-4 0.0 0.0 5.49234389336701 0.0 16 1.2332645993863274E-4 0.0 0.0 5.90811849864012 0.0 17 1.2332645993863274E-4 0.0 0.0 6.397683435776512 0.0 18 1.2332645993863274E-4 0.0 0.0 6.963957430994735 0.0 19 1.64435279918177E-4 0.0 0.0 7.296938872829044 0.0 20 1.64435279918177E-4 0.0 0.0 7.636579943500037 0.0 21 2.0554409989772125E-4 0.0 0.0 8.067729247445499 0.0 22 2.0554409989772125E-4 0.0 0.0 8.539699609630645 0.0 23 2.0554409989772125E-4 0.0 0.0 9.000570590421317 0.0 24 2.0554409989772125E-4 0.0 0.0 9.367425699918769 0.0 25 2.0554409989772125E-4 0.0 0.0 9.70011938001322 0.0 26 2.0554409989772125E-4 0.0 0.0 10.005599021281213 0.0 27 2.0554409989772125E-4 0.0 0.0 10.311654186028921 0.0 28 2.0554409989772125E-4 0.0 0.0 10.634111769948467 0.0 29 2.0554409989772125E-4 0.0 0.0 10.9594058624466 0.0 30 2.0554409989772125E-4 0.0 0.0 11.34360889397542 0.0 31 2.0554409989772125E-4 0.0 0.0 11.715027082490602 0.0 32 2.0554409989772125E-4 0.0 0.0 12.08052560092873 0.0 33 2.0554409989772125E-4 0.0 0.0 12.42065997743948 0.0 34 2.466529198772655E-4 0.0 0.0 12.7598488510907 0.0 35 2.466529198772655E-4 0.0 0.0 13.099448812941715 0.0 36 2.466529198772655E-4 0.0 0.0 13.459644293602482 0.0 37 2.466529198772655E-4 0.0 0.0 13.831638005597377 0.0 38 2.466529198772655E-4 0.0 0.0 14.180323016663872 0.0 39 2.466529198772655E-4 0.0 0.0 14.530200183509772 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGCGTC 20 7.034842E-4 45.0 33 CGTTTTT 69540 0.0 44.501724 1 AATACGG 75 0.0 42.000004 2 GTGTCGA 50 1.0822987E-9 40.499996 11 GTTTTTT 78260 0.0 39.73294 2 TAGTCCG 40 3.4603545E-7 39.375 1 TACGGGT 190 0.0 39.078945 4 CAACGAC 145 0.0 38.793102 12 CGTTCGA 35 6.251168E-6 38.571426 14 AATAGCG 35 6.251168E-6 38.571426 1 CTTACGA 35 6.251168E-6 38.571426 29 TACGGGA 605 0.0 38.305782 4 CGGTCTA 90 0.0 37.5 31 TCGGTAC 30 1.1402968E-4 37.499996 36 CGATGAT 80 0.0 36.5625 10 CGCAATC 160 0.0 36.5625 20 ATAACGG 105 0.0 36.428574 2 GATTACG 130 0.0 36.346157 1 ATATCGA 25 0.0021075706 35.999996 21 ACGTCGA 25 0.0021075706 35.999996 22 >>END_MODULE