FastQCFastQC Report
Sat 14 Jan 2017
SRR2934878.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934878.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences742735
Sequences flagged as poor quality0
Sequence length51
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT399135.373787420816307No Hit
CCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC67320.9063797989861795Illumina Single End Adapter 1 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC52460.70630844109945Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGCT36570.4923694184332232Illumina Single End Adapter 1 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC24610.3313429419644961Illumina Single End Adapter 1 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG23890.321649040371061No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCC18510.24921405346456002No Hit
ACTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC15760.21218873487852333Illumina Single End Adapter 1 (95% over 21bp)
CGTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTC10420.1402922980605465No Hit
ACCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG10020.1349067971753048No Hit
GCCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG9080.12225087009498678No Hit
AGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG8530.11484580637777943No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGC8370.11269160602368274No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACGTAT351.2111559E-745.0000041
CGGTCTA650.045.00000431
TATCCGG351.2111559E-745.0000042
AACGTAG207.031672E-445.01
TTGGCTA207.031672E-445.034
TCGTTGT253.8894676E-545.023
GGTCGTG207.031672E-445.08
CATGCGT207.031672E-445.029
CTATCGC207.031672E-445.020
GTCCTCG207.031672E-445.016
CGTTGTA253.8894676E-545.024
ATTCGGT253.8894676E-545.015
CGCTGAT207.031672E-445.07
GCCGATC253.8894676E-545.09
GTAGCGA453.8380676E-1045.034
CGCTCCA207.031672E-445.015
CTACGTA253.8894676E-545.029
TACGAAG207.031672E-445.01
AGCGCTA253.8894676E-545.010
ACGTGAG253.8894676E-545.01