SRR2934878.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934878.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	742735
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	39913	5.373787420816307	No Hit
CCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC	6732	0.9063797989861795	Illumina Single End Adapter 1 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC	5246	0.70630844109945	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGCT	3657	0.4923694184332232	Illumina Single End Adapter 1 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC	2461	0.3313429419644961	Illumina Single End Adapter 1 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG	2389	0.321649040371061	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCC	1851	0.24921405346456002	No Hit
ACTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC	1576	0.21218873487852333	Illumina Single End Adapter 1 (95% over 21bp)
CGTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTC	1042	0.1402922980605465	No Hit
ACCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG	1002	0.1349067971753048	No Hit
GCCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG	908	0.12225087009498678	No Hit
AGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG	853	0.11484580637777943	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGC	837	0.11269160602368274	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GACGTAT	35	1.2111559E-7	45.000004	1
CGGTCTA	65	0.0	45.000004	31
TATCCGG	35	1.2111559E-7	45.000004	2
AACGTAG	20	7.031672E-4	45.0	1
TTGGCTA	20	7.031672E-4	45.0	34
TCGTTGT	25	3.8894676E-5	45.0	23
GGTCGTG	20	7.031672E-4	45.0	8
CATGCGT	20	7.031672E-4	45.0	29
CTATCGC	20	7.031672E-4	45.0	20
GTCCTCG	20	7.031672E-4	45.0	16
CGTTGTA	25	3.8894676E-5	45.0	24
ATTCGGT	25	3.8894676E-5	45.0	15
CGCTGAT	20	7.031672E-4	45.0	7
GCCGATC	25	3.8894676E-5	45.0	9
GTAGCGA	45	3.8380676E-10	45.0	34
CGCTCCA	20	7.031672E-4	45.0	15
CTACGTA	25	3.8894676E-5	45.0	29
TACGAAG	20	7.031672E-4	45.0	1
AGCGCTA	25	3.8894676E-5	45.0	10
ACGTGAG	25	3.8894676E-5	45.0	1