Basic Statistics
Measure | Value |
---|---|
Filename | SRR2934878.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 742735 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 37 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 39913 | 5.373787420816307 | No Hit |
CCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC | 6732 | 0.9063797989861795 | Illumina Single End Adapter 1 (95% over 21bp) |
GCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC | 5246 | 0.70630844109945 | Illumina Single End Adapter 1 (95% over 21bp) |
CTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGCT | 3657 | 0.4923694184332232 | Illumina Single End Adapter 1 (95% over 22bp) |
TCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC | 2461 | 0.3313429419644961 | Illumina Single End Adapter 1 (95% over 21bp) |
CGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG | 2389 | 0.321649040371061 | No Hit |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCC | 1851 | 0.24921405346456002 | No Hit |
ACTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC | 1576 | 0.21218873487852333 | Illumina Single End Adapter 1 (95% over 21bp) |
CGTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTC | 1042 | 0.1402922980605465 | No Hit |
ACCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG | 1002 | 0.1349067971753048 | No Hit |
GCCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG | 908 | 0.12225087009498678 | No Hit |
AGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG | 853 | 0.11484580637777943 | No Hit |
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGC | 837 | 0.11269160602368274 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GACGTAT | 35 | 1.2111559E-7 | 45.000004 | 1 |
CGGTCTA | 65 | 0.0 | 45.000004 | 31 |
TATCCGG | 35 | 1.2111559E-7 | 45.000004 | 2 |
AACGTAG | 20 | 7.031672E-4 | 45.0 | 1 |
TTGGCTA | 20 | 7.031672E-4 | 45.0 | 34 |
TCGTTGT | 25 | 3.8894676E-5 | 45.0 | 23 |
GGTCGTG | 20 | 7.031672E-4 | 45.0 | 8 |
CATGCGT | 20 | 7.031672E-4 | 45.0 | 29 |
CTATCGC | 20 | 7.031672E-4 | 45.0 | 20 |
GTCCTCG | 20 | 7.031672E-4 | 45.0 | 16 |
CGTTGTA | 25 | 3.8894676E-5 | 45.0 | 24 |
ATTCGGT | 25 | 3.8894676E-5 | 45.0 | 15 |
CGCTGAT | 20 | 7.031672E-4 | 45.0 | 7 |
GCCGATC | 25 | 3.8894676E-5 | 45.0 | 9 |
GTAGCGA | 45 | 3.8380676E-10 | 45.0 | 34 |
CGCTCCA | 20 | 7.031672E-4 | 45.0 | 15 |
CTACGTA | 25 | 3.8894676E-5 | 45.0 | 29 |
TACGAAG | 20 | 7.031672E-4 | 45.0 | 1 |
AGCGCTA | 25 | 3.8894676E-5 | 45.0 | 10 |
ACGTGAG | 25 | 3.8894676E-5 | 45.0 | 1 |