##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934878.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 742735 Sequences flagged as poor quality 0 Sequence length 51 %GC 37 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.331496428739726 33.0 31.0 34.0 30.0 34.0 2 32.52991578422991 34.0 31.0 34.0 31.0 34.0 3 32.58647431452672 34.0 31.0 34.0 31.0 34.0 4 36.05134267268945 37.0 35.0 37.0 35.0 37.0 5 35.901256841269095 37.0 35.0 37.0 35.0 37.0 6 35.88745784162588 37.0 35.0 37.0 35.0 37.0 7 36.09398641507401 37.0 35.0 37.0 35.0 37.0 8 36.10710280248002 37.0 36.0 37.0 35.0 37.0 9 37.95607585477997 39.0 39.0 39.0 35.0 39.0 10 37.40168835452752 39.0 37.0 39.0 34.0 39.0 11 37.32627922475715 39.0 37.0 39.0 34.0 39.0 12 37.33050684295206 39.0 37.0 39.0 34.0 39.0 13 37.28666348024531 39.0 37.0 39.0 34.0 39.0 14 38.436038425548816 40.0 38.0 41.0 34.0 41.0 15 38.48454428564697 40.0 38.0 41.0 34.0 41.0 16 38.586883612593994 40.0 38.0 41.0 34.0 41.0 17 38.62924730893253 40.0 38.0 41.0 34.0 41.0 18 38.191488215850875 39.0 38.0 40.0 35.0 41.0 19 37.71422916652642 38.0 37.0 40.0 34.0 41.0 20 37.157804600564134 38.0 35.0 40.0 34.0 41.0 21 37.09570438985641 38.0 35.0 40.0 34.0 41.0 22 36.89773876281581 38.0 35.0 40.0 33.0 41.0 23 36.75686617703488 38.0 35.0 40.0 33.0 41.0 24 36.53715524379489 37.0 35.0 40.0 33.0 41.0 25 36.4158643392327 37.0 35.0 40.0 33.0 41.0 26 36.60346018431877 37.0 35.0 40.0 33.0 41.0 27 36.6845779450275 38.0 35.0 40.0 33.0 41.0 28 36.6879896598383 38.0 35.0 40.0 33.0 41.0 29 36.63121436313086 38.0 35.0 40.0 33.0 41.0 30 36.363655947275944 38.0 35.0 40.0 33.0 41.0 31 35.84417053188553 38.0 35.0 40.0 31.0 41.0 32 35.219651692730245 38.0 35.0 40.0 25.0 41.0 33 34.3166162897938 38.0 35.0 40.0 18.0 41.0 34 33.55893420937481 38.0 34.0 40.0 15.0 41.0 35 33.09389890068463 38.0 33.0 40.0 10.0 41.0 36 32.85130497418326 38.0 33.0 40.0 10.0 41.0 37 32.62304321191273 37.0 33.0 40.0 9.0 41.0 38 32.531917844183994 37.0 32.0 40.0 8.0 41.0 39 32.46728914081065 37.0 32.0 40.0 8.0 41.0 40 32.33561095141605 37.0 32.0 40.0 8.0 41.0 41 32.18599635132315 37.0 31.0 40.0 8.0 41.0 42 32.0588325580456 37.0 31.0 40.0 8.0 41.0 43 31.955927753505623 37.0 31.0 40.0 8.0 41.0 44 31.83900179741092 37.0 30.0 40.0 7.0 41.0 45 31.790113566749916 37.0 30.0 40.0 7.0 41.0 46 31.662145987465248 37.0 30.0 40.0 7.0 41.0 47 31.576259365722635 36.0 30.0 40.0 7.0 41.0 48 31.518665472880638 36.0 29.0 40.0 7.0 41.0 49 31.392312197486316 36.0 28.0 40.0 7.0 41.0 50 31.2686503261594 36.0 28.0 40.0 7.0 41.0 51 30.626853453789035 35.0 26.0 39.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 4.0 9 6.0 10 8.0 11 7.0 12 9.0 13 13.0 14 12.0 15 32.0 16 56.0 17 112.0 18 269.0 19 500.0 20 905.0 21 1457.0 22 2535.0 23 4401.0 24 8926.0 25 19160.0 26 31333.0 27 34252.0 28 27712.0 29 20472.0 30 17013.0 31 16245.0 32 17983.0 33 22710.0 34 38170.0 35 57733.0 36 69155.0 37 78466.0 38 139300.0 39 133717.0 40 61.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.61002914902354 17.80769722714023 20.441072522501297 35.14120110133493 2 47.95855857068806 19.36074104492181 19.226238160312896 13.45446222407723 3 21.956552471608312 17.99740149582287 47.16742849064606 12.878617541922758 4 20.912303849959947 19.1928480548244 46.27222360599676 13.622624489218902 5 17.47568109756508 21.65779180999953 46.29834328529018 14.568183807145212 6 18.15008044591947 23.216086491144218 45.59001528135877 13.043817781577548 7 56.461052730785546 4.354850653328576 33.73558537028685 5.448511245599036 8 56.16296525678741 3.272230337872862 33.524069823018976 7.040734582320747 9 52.98848175998169 4.273260314917164 35.899075713410575 6.839182211690575 10 26.428672406713027 17.804735201653347 42.19997711162124 13.566615280012387 11 18.927881411270505 20.28516227187355 44.849912822204416 15.937043494651522 12 17.368778904993032 17.829104593159066 49.93086363238571 14.87125286946219 13 15.97151070031707 20.751277373491217 50.30744478178624 12.969767144405475 14 12.533406935178764 23.868270648346986 47.53741240146216 16.060910015012084 15 10.798063912431756 21.29911745104243 52.38759449871084 15.515224137814968 16 11.607235420439324 21.92800931691653 49.14511905322894 17.3196362094152 17 11.793843026112947 21.481820568574257 46.02502911536416 20.699307289948635 18 13.107905242111926 20.872181868364894 49.36498212686894 16.654930762654242 19 13.08542077591604 22.35629127481538 46.65338243114974 17.904905518118845 20 13.768436925686819 23.720977199135625 46.67667472247841 15.833911152699146 21 13.633260853467252 23.44375854106781 47.720923344126774 15.202057261338162 22 13.023352878213629 22.518933401549678 44.63099221121934 19.826721509017347 23 11.618410334776199 22.056318875507415 46.48306596565397 19.842204824062417 24 14.868425481497438 20.498966657017643 46.33886917945162 18.293738682033293 25 12.295771708617474 22.569961022437344 45.26850087850983 19.86576639043535 26 11.38346785865753 22.980874739981285 47.52408328677119 18.111574114589995 27 13.934444990474395 21.645943708051995 46.18120864103617 18.238402660437437 28 12.519135357832875 20.462479888520132 46.65109359327351 20.367291160373487 29 12.328084713928925 18.689707634620692 48.094946380606814 20.88726127084357 30 14.78481558025406 20.555918328879073 45.05456185584361 19.60470423502326 31 15.78019078136886 24.198132577568042 41.312985115821924 18.708691525241168 32 15.797155109157371 22.375544440480116 41.24580099227854 20.581499458083975 33 15.61256706631571 21.255629531394106 42.30674466667115 20.825058735619027 34 15.22386853992339 22.327748120123598 41.63557661884791 20.812806721105105 35 15.327539431964293 21.989538664530418 39.23377786155224 23.44914404195305 36 17.686927369788684 22.395874706321905 40.23763522656129 19.67956269732812 37 17.78561667351074 24.745972655119257 38.27462015389069 19.193790517479318 38 17.95727951422782 24.747722942906957 35.409533682942104 21.88546385992312 39 17.427480864642167 23.184715948487682 39.89309780742795 19.494705379442195 40 18.91939924737625 23.604515742492275 38.79324388913946 18.68284112099201 41 18.168795061495686 23.90610379206581 35.225349552666835 22.69975159377167 42 19.277265781200562 21.63342241849381 37.74051310359684 21.348798696708783 43 20.110133493103195 21.35337637246124 36.880313974701615 21.656176159733956 44 17.882690326967225 22.386988629861257 35.35433229886837 24.37598874430315 45 17.732030939702586 21.558294681144687 34.779295441846685 25.93037893730604 46 19.831972372380456 22.247504156933495 36.97913791594579 20.94138555474025 47 16.126882400856292 22.73368024934869 39.768827374501 21.370609975294013 48 16.892027439127013 20.680592674372424 38.240826135835796 24.18655375066477 49 18.607444108598624 18.523430294788852 40.74656506021663 22.122560536395888 50 17.758958444128794 18.698862986125604 38.86352467569187 24.678653894053735 51 16.184103347761987 19.5042646435135 34.727998545914765 29.58363346280975 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 602.0 1 617.0 2 632.0 3 27275.0 4 53918.0 5 34281.5 6 14645.0 7 14509.0 8 14373.0 9 15308.0 10 16243.0 11 16713.5 12 17184.0 13 17180.5 14 17177.0 15 16391.0 16 15605.0 17 14716.0 18 13827.0 19 12578.5 20 11330.0 21 10374.0 22 9418.0 23 8804.5 24 8191.0 25 7724.5 26 7297.5 27 7337.0 28 7040.5 29 6744.0 30 7404.0 31 8064.0 32 8745.5 33 9427.0 34 10225.0 35 11023.0 36 12637.5 37 14252.0 38 15490.5 39 16729.0 40 20175.5 41 23622.0 42 28793.5 43 33965.0 44 40678.5 45 47392.0 46 58344.0 47 69296.0 48 80692.0 49 92088.0 50 88813.0 51 85538.0 52 65120.0 53 44702.0 54 35280.5 55 25859.0 56 20820.0 57 15781.0 58 13324.5 59 10868.0 60 9032.5 61 7197.0 62 5605.0 63 4013.0 64 3722.5 65 3432.0 66 2409.0 67 1386.0 68 1294.5 69 1203.0 70 1029.0 71 855.0 72 726.0 73 597.0 74 492.5 75 266.5 76 145.0 77 179.0 78 213.0 79 158.5 80 104.0 81 86.0 82 68.0 83 48.0 84 28.0 85 20.0 86 12.0 87 7.0 88 2.0 89 1.0 90 0.0 91 0.5 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 742735.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.81381107340656 #Duplication Level Percentage of deduplicated Percentage of total 1 74.96538620282567 29.096923371214338 2 11.151360722839057 8.656536166153632 3 4.5610250489950825 5.3109229365831006 4 2.336954482945572 3.6282443915279976 5 1.40287239289063 2.7225412008877345 6 0.9093033079121624 2.117611608103578 7 0.6304010403654319 1.712778681685597 8 0.4958168607340621 1.5395633567633136 9 0.35003479444565044 1.2227565942658958 >10 2.9292085056704464 24.385666739014386 >50 0.19666703231264343 4.875369793608146 >100 0.06249562501124314 4.485477084528861 >500 0.004943156780550292 1.2186025736520185 >1k 0.002471578390275146 1.915612547740431 >5k 7.061652543643274E-4 1.6415229000454203 >10k+ 3.530826271821637E-4 5.469870054225485 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 39913 5.373787420816307 No Hit CCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC 6732 0.9063797989861795 Illumina Single End Adapter 1 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC 5246 0.70630844109945 Illumina Single End Adapter 1 (95% over 21bp) CTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGCT 3657 0.4923694184332232 Illumina Single End Adapter 1 (95% over 22bp) TCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC 2461 0.3313429419644961 Illumina Single End Adapter 1 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG 2389 0.321649040371061 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCC 1851 0.24921405346456002 No Hit ACTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC 1576 0.21218873487852333 Illumina Single End Adapter 1 (95% over 21bp) CGTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTC 1042 0.1402922980605465 No Hit ACCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG 1002 0.1349067971753048 No Hit GCCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG 908 0.12225087009498678 No Hit AGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG 853 0.11484580637777943 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGC 837 0.11269160602368274 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5194315603815627 0.0 2 0.0 0.0 0.0 2.8164823254592823 0.0 3 0.0 0.0 0.0 3.9991383198583614 0.0 4 0.0 0.0 0.0 5.17142722505335 0.0 5 0.0 0.0 0.0 8.037186883612595 0.0 6 0.0 0.0 0.0 9.522508027762257 0.0 7 0.0 0.0 0.0 11.117020202360196 0.0 8 0.0 0.0 0.0 13.48825624213212 0.0 9 0.0 0.0 0.0 14.314526715450329 0.0 10 0.0 0.0 0.0 16.17292843342511 0.0 11 0.0 0.0 0.0 19.194598342612103 0.0 12 0.0 0.0 0.0 21.26895864608508 0.0 13 0.0 0.0 0.0 22.048913811790207 0.0 14 1.346375221310427E-4 0.0 0.0 22.313341905255577 0.0 15 1.346375221310427E-4 0.0 0.0 22.810558274485516 0.0 16 1.346375221310427E-4 0.0 0.0 24.085037058977967 0.0 17 1.346375221310427E-4 0.0 0.0 25.687492847381638 0.0 18 1.346375221310427E-4 0.0 0.0 27.414757618800785 0.0 19 1.346375221310427E-4 0.0 0.0 28.351161585222187 0.0 20 1.346375221310427E-4 0.0 0.0 29.1752778581863 0.0 21 1.346375221310427E-4 0.0 0.0 30.26139874921742 0.0 22 1.346375221310427E-4 0.0 0.0 31.309147946441193 0.0 23 1.346375221310427E-4 0.0 0.0 32.285808531979775 0.0 24 1.346375221310427E-4 0.0 0.0 33.08151628777424 0.0 25 1.346375221310427E-4 0.0 0.0 33.711889166391785 0.0 26 1.346375221310427E-4 0.0 0.0 34.28652211084707 0.0 27 1.346375221310427E-4 0.0 0.0 34.85711592963843 0.0 28 1.346375221310427E-4 0.0 0.0 35.38920341710031 0.0 29 1.346375221310427E-4 0.0 0.0 35.98860966562771 0.0 30 1.346375221310427E-4 0.0 0.0 36.630830646192784 0.0 31 2.692750442620854E-4 0.0 0.0 37.20909880374562 0.0 32 2.692750442620854E-4 0.0 0.0 37.72543370111816 0.0 33 2.692750442620854E-4 0.0 0.0 38.25684800096939 0.0 34 2.692750442620854E-4 0.0 0.0 38.75850740842966 0.0 35 2.692750442620854E-4 0.0 0.0 39.264609854120245 0.0 36 2.692750442620854E-4 0.0 0.0 39.725878004941194 0.0 37 2.692750442620854E-4 0.0 0.0 40.18270311753182 0.0 38 2.692750442620854E-4 0.0 0.0 40.621890714723285 0.0 39 2.692750442620854E-4 0.0 0.0 41.09743044289013 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GACGTAT 35 1.2111559E-7 45.000004 1 CGGTCTA 65 0.0 45.000004 31 TATCCGG 35 1.2111559E-7 45.000004 2 AACGTAG 20 7.031672E-4 45.0 1 TTGGCTA 20 7.031672E-4 45.0 34 TCGTTGT 25 3.8894676E-5 45.0 23 GGTCGTG 20 7.031672E-4 45.0 8 CATGCGT 20 7.031672E-4 45.0 29 CTATCGC 20 7.031672E-4 45.0 20 GTCCTCG 20 7.031672E-4 45.0 16 CGTTGTA 25 3.8894676E-5 45.0 24 ATTCGGT 25 3.8894676E-5 45.0 15 CGCTGAT 20 7.031672E-4 45.0 7 GCCGATC 25 3.8894676E-5 45.0 9 GTAGCGA 45 3.8380676E-10 45.0 34 CGCTCCA 20 7.031672E-4 45.0 15 CTACGTA 25 3.8894676E-5 45.0 29 TACGAAG 20 7.031672E-4 45.0 1 AGCGCTA 25 3.8894676E-5 45.0 10 ACGTGAG 25 3.8894676E-5 45.0 1 >>END_MODULE