SRR2934875.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934875.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1583659
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	60454	3.8173621972912097	No Hit
GCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC	4138	0.26129362444819243	TruSeq Adapter, Index 13 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC	3375	0.21311406053954796	TruSeq Adapter, Index 13 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGCT	1993	0.12584779930527973	TruSeq Adapter, Index 8 (95% over 24bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	1593	0.10058983657466664	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATTGCG	25	3.8914754E-5	45.000004	1
TAGACGC	20	7.034095E-4	45.0	1
AATGCGT	20	7.034095E-4	45.0	13
CGCGTAA	45	3.8562575E-10	45.0	31
GCGTAAC	45	3.8562575E-10	45.0	32
CGTTTTT	44010	0.0	44.493862	1
TGCGACG	50	1.0822987E-9	40.500004	1
GTTTTTT	48945	0.0	40.17775	2
GGTACGA	45	1.9290383E-8	40.0	9
GTCGATG	40	3.4593177E-7	39.375	1
GTATGCG	40	3.4593177E-7	39.375	1
TATAGCG	80	0.0	39.375	1
CAATGCG	40	3.4593177E-7	39.375	1
TACGTAG	40	3.4593177E-7	39.375	1
AATTGCG	110	0.0	38.863636	1
GTCGCAC	30	1.1401168E-4	37.499996	25
ATCGTAG	30	1.1401168E-4	37.499996	1
CGCACAT	30	1.1401168E-4	37.499996	30
TCTAGCG	55	2.750312E-9	36.81818	1
TACGAGG	165	0.0	36.81818	2