SRR2934870.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934870.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1447945
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	54885	3.790544530351636	No Hit
CCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC	5268	0.36382597405288186	TruSeq Adapter, Index 15 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC	4609	0.3183131955978991	TruSeq Adapter, Index 15 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGCT	2530	0.17473039376495653	TruSeq Adapter, Index 21 (95% over 23bp)
TCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC	1715	0.11844372541774723	TruSeq Adapter, Index 15 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTG	1664	0.11492149218375008	TruSeq Adapter, Index 21 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	1505	0.10394041210128838	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGCAC	20	7.0338935E-4	45.000004	36
TTAGCCG	20	7.0338935E-4	45.000004	1
TGACGTA	25	3.8913087E-5	45.000004	26
TGACGCG	25	3.8913087E-5	45.000004	13
ACTAACG	20	7.0338935E-4	45.000004	1
GTATACG	50	2.1827873E-11	45.000004	1
TCGGTAA	20	7.0338935E-4	45.000004	13
TAATCCG	20	7.0338935E-4	45.000004	43
ATTAGCG	35	1.2122291E-7	45.0	1
TGTAGCG	70	0.0	45.0	1
TTACGCG	30	2.1658943E-6	44.999996	1
CGTTTTT	36930	0.0	44.5065	1
TACGCGG	100	0.0	42.750004	2
GTAAGCG	50	1.0822987E-9	40.500004	1
GTCGAAG	45	1.9288564E-8	40.0	1
TATAGCG	45	1.9288564E-8	40.0	1
ATCGCAT	45	1.9288564E-8	40.0	10
GTTTTTT	41280	0.0	39.969116	2
GCTAGCG	80	0.0	39.375004	1
TATACGG	105	0.0	38.57143	2