##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934870.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1447945 Sequences flagged as poor quality 0 Sequence length 51 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.6098726125647 34.0 31.0 34.0 31.0 34.0 2 32.765539436926126 34.0 31.0 34.0 31.0 34.0 3 32.82039234915691 34.0 31.0 34.0 31.0 34.0 4 36.21270075866141 37.0 37.0 37.0 35.0 37.0 5 36.104773316666034 37.0 35.0 37.0 35.0 37.0 6 36.097242643884954 37.0 36.0 37.0 35.0 37.0 7 36.2607999613245 37.0 37.0 37.0 35.0 37.0 8 36.2750180428124 37.0 37.0 37.0 35.0 37.0 9 38.07520589525154 39.0 39.0 39.0 37.0 39.0 10 37.66729606442234 39.0 38.0 39.0 35.0 39.0 11 37.53713918691663 39.0 37.0 39.0 35.0 39.0 12 37.4676172092172 39.0 37.0 39.0 35.0 39.0 13 37.42040339930039 39.0 37.0 39.0 35.0 39.0 14 38.68235050364482 40.0 38.0 41.0 35.0 41.0 15 38.710797716764105 40.0 38.0 41.0 35.0 41.0 16 38.77744872906084 40.0 38.0 41.0 35.0 41.0 17 38.748895158310575 40.0 38.0 41.0 35.0 41.0 18 38.26989699194375 39.0 38.0 41.0 34.0 41.0 19 37.81926523452203 38.0 37.0 41.0 34.0 41.0 20 37.294652075873046 38.0 35.0 41.0 34.0 41.0 21 37.242418738280804 38.0 35.0 41.0 34.0 41.0 22 37.05203996008136 38.0 35.0 40.0 34.0 41.0 23 36.95526280349046 38.0 35.0 40.0 34.0 41.0 24 36.787964321849245 37.0 35.0 40.0 33.0 41.0 25 36.6613856189289 37.0 35.0 40.0 33.0 41.0 26 36.79794950775064 38.0 35.0 40.0 33.0 41.0 27 36.84775319504539 38.0 35.0 40.0 34.0 41.0 28 36.79764839134083 38.0 35.0 40.0 33.0 41.0 29 36.680882215830025 38.0 35.0 40.0 33.0 41.0 30 36.380915711577444 38.0 35.0 40.0 33.0 41.0 31 35.91697889077278 38.0 35.0 40.0 31.0 41.0 32 35.206675667929375 38.0 35.0 40.0 25.0 41.0 33 34.313520195863795 38.0 35.0 40.0 18.0 41.0 34 33.54312076770872 38.0 34.0 41.0 14.0 41.0 35 33.045799391551476 38.0 33.0 41.0 10.0 41.0 36 32.856886138630955 38.0 33.0 41.0 10.0 41.0 37 32.63738401665809 38.0 33.0 40.0 9.0 41.0 38 32.53784570546533 37.0 32.0 40.0 9.0 41.0 39 32.52094658291579 37.0 32.0 40.0 9.0 41.0 40 32.41012607523076 37.0 31.0 40.0 8.0 41.0 41 32.2874114693583 37.0 31.0 40.0 8.0 41.0 42 32.17441822721167 37.0 31.0 40.0 8.0 41.0 43 32.06914834472304 37.0 31.0 40.0 8.0 41.0 44 31.962628414753322 37.0 30.0 40.0 8.0 41.0 45 31.92209994164143 37.0 30.0 40.0 8.0 41.0 46 31.858389648778097 36.0 30.0 40.0 8.0 41.0 47 31.84104644858748 36.0 30.0 40.0 8.0 41.0 48 31.79116955409218 36.0 30.0 40.0 8.0 41.0 49 31.669642838643732 36.0 29.0 40.0 8.0 41.0 50 31.56003991864332 36.0 29.0 40.0 8.0 41.0 51 31.006761997175307 35.0 27.0 40.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 7.0 9 11.0 10 15.0 11 6.0 12 14.0 13 22.0 14 27.0 15 52.0 16 97.0 17 207.0 18 420.0 19 825.0 20 1474.0 21 2345.0 22 3865.0 23 6512.0 24 12601.0 25 27625.0 26 51145.0 27 67120.0 28 64961.0 29 53702.0 30 42403.0 31 37028.0 32 36081.0 33 43359.0 34 84446.0 35 101484.0 36 97807.0 37 126294.0 38 247119.0 39 338637.0 40 233.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.00448566761859 16.09246207556226 19.01349844089382 35.88955381592533 2 48.874301164754186 18.533507833515774 19.111292210684798 13.48089879104524 3 22.84575726287946 18.835383940688356 45.75291188546527 12.565946910966922 4 21.646195124814824 19.41227049369969 45.35683330513245 13.58470107635304 5 19.403706632503308 21.812361657383395 43.92141966718349 14.862512042929806 6 20.2465563263798 25.017386710130562 42.826626701981084 11.909430261508552 7 60.20850239477328 4.317774501103288 31.565011101941025 3.908712002182403 8 61.25909478605887 3.9188643215039245 30.56186526421929 4.260175628217923 9 56.855750736388465 5.620931734285487 32.45047291160921 5.072844617716833 10 31.609971373222052 20.9012773275228 37.36868458401389 10.120066715241256 11 24.118250347906862 18.596562714744 42.98333154919558 14.301855388153555 12 23.083335347682404 15.364188556885793 45.87798569697053 15.674490398461268 13 19.409853274813614 17.396171815918425 47.14598966120951 16.047985248058456 14 15.437326694038791 20.12355441677688 46.444650867263604 17.994468021920724 15 15.812340938364372 19.092023522992932 50.52933640435238 14.566299134290322 16 17.64473098080383 18.651606241949796 47.97606262668817 15.727600150558205 17 16.896567203864787 19.37718628815321 46.024192907879794 17.702053600102214 18 17.320340206292368 19.931696300619155 47.18224794450065 15.565715548587827 19 17.928926858409678 21.157985973224122 45.1276809547324 15.785406213633804 20 20.34214006747494 20.612937646112247 45.270711249391375 13.774211037021434 21 18.93504242219145 21.134780671917788 45.35434702284962 14.57582988304114 22 16.920877519519042 19.97189119752477 45.22133092071867 17.885900362237518 23 17.15313772277262 19.71331784011133 46.19022131365487 16.94332312346118 24 19.039811595053678 17.07191916820045 46.72028288367307 17.167986353072802 25 16.601459309573222 19.213713228057696 44.7779439136155 19.40688354875358 26 15.232277469102762 20.504991556999748 46.47407187427699 17.788659099620496 27 15.551143171874623 21.032428717941634 45.91928560822407 17.497142501959672 28 13.549685934203302 22.0915849704236 47.19592249705617 17.162806598316923 29 16.00053869449461 20.582204434560705 46.07094882747618 17.346308043468504 30 17.786034690544188 21.004941486037108 45.12422778489514 16.084796038523564 31 18.055796318230318 21.334857332288173 43.753043105919076 16.85630324356243 32 18.45215115215012 23.700278670805865 41.68114120356782 16.1664289734762 33 19.226559019852274 23.258549185224577 39.68438027687516 17.83051151804799 34 17.82636771424329 23.993936233765787 40.33081367040875 17.84888238158217 35 16.806508534509256 26.754469265061864 37.533124531663844 18.905897668765043 36 18.133630766361982 28.561858357879615 35.27012421051904 18.034386665239357 37 18.72467531570605 28.79695016039974 36.200270037881275 16.278104486012936 38 18.435299683344326 28.55322543328648 34.16580049656582 18.845674386803367 39 20.522602723169733 25.361805869698088 34.810990748958005 19.30460065817417 40 20.768399352185337 24.33807913974633 35.50770229532199 19.38581921274634 41 17.048437613307136 26.81586662476821 34.600830832662844 21.534864929261815 42 17.34071390833215 26.42199807313123 34.58301247630262 21.654275542233993 43 18.646219297003686 25.687923229128177 34.93350921478371 20.732348259084425 44 18.251107604225297 25.371681935432633 34.61422913163138 21.76298132871069 45 18.619906142843824 24.802737673046973 34.39909665077058 22.17825953333863 46 18.981383961407374 25.724803082990032 35.10906836930961 20.18474458629299 47 16.8211499746192 24.95046427868462 37.90447841596193 20.323907330734247 48 16.66334011305678 23.346328762487527 37.97575184140282 22.01457928305288 49 17.839075379244377 22.345600143651865 38.81853247188257 20.99679200522119 50 17.56323617264468 22.014233966069153 38.171339380984776 22.251190480301393 51 16.266847152343495 22.142968137601912 37.14726733404929 24.442917376005305 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 495.0 1 797.0 2 1099.0 3 60966.5 4 120834.0 5 81322.0 6 41810.0 7 39201.5 8 36593.0 9 34990.5 10 33388.0 11 31707.5 12 30027.0 13 28137.5 14 26248.0 15 23895.5 16 21543.0 17 19886.5 18 18230.0 19 16986.5 20 15743.0 21 14360.0 22 12977.0 23 12177.0 24 11377.0 25 11521.0 26 12972.5 27 14280.0 28 14939.0 29 15598.0 30 17369.5 31 19141.0 32 21670.5 33 24200.0 34 27076.5 35 29953.0 36 31243.0 37 32533.0 38 34712.0 39 36891.0 40 43790.5 41 50690.0 42 57671.0 43 64652.0 44 80412.5 45 96173.0 46 104649.0 47 113125.0 48 113347.0 49 113569.0 50 96519.5 51 79470.0 52 71693.5 53 63917.0 54 59708.0 55 55499.0 56 53134.0 57 50769.0 58 49916.0 59 49063.0 60 49570.5 61 50078.0 62 45262.0 63 40446.0 64 34782.0 65 29118.0 66 22145.5 67 15173.0 68 12043.5 69 8914.0 70 7031.0 71 5148.0 72 4184.0 73 3220.0 74 2619.5 75 1558.5 76 1098.0 77 832.5 78 567.0 79 419.0 80 271.0 81 234.5 82 198.0 83 143.0 84 88.0 85 49.0 86 10.0 87 12.5 88 15.0 89 18.5 90 22.0 91 14.5 92 7.0 93 4.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1447945.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.07659788246135 #Duplication Level Percentage of deduplicated Percentage of total 1 75.20398640770438 24.12288031158022 2 10.568815772483543 6.780233072555395 3 4.038311718481957 3.8860590335333165 4 2.1213556970661362 2.7218349464183578 5 1.2064177391928137 1.934888834917801 6 0.7660420159896425 1.4743213024781878 7 0.5591665887538159 1.2555313271734652 8 0.4092324246848206 1.050142714166371 9 0.3295252401183694 0.9513043757458612 >10 4.163759650587914 32.95521629720273 >50 0.5493891334082124 11.005643312109484 >100 0.07520205027243256 4.736144590953911 >500 0.004617669659414529 0.999522014847244 >1k 0.0037381135338117612 1.883511106095604 >5k 2.1988903140069186E-4 0.37156742461472597 >10k+ 2.1988903140069186E-4 3.8711993356072956 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 54885 3.790544530351636 No Hit CCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC 5268 0.36382597405288186 TruSeq Adapter, Index 15 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC 4609 0.3183131955978991 TruSeq Adapter, Index 15 (95% over 21bp) CTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGCT 2530 0.17473039376495653 TruSeq Adapter, Index 21 (95% over 23bp) TCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC 1715 0.11844372541774723 TruSeq Adapter, Index 15 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTG 1664 0.11492149218375008 TruSeq Adapter, Index 21 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 1505 0.10394041210128838 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.90633967450421E-5 0.0 0.0 0.1850208398799678 0.0 2 6.90633967450421E-5 0.0 0.0 1.1247664793897558 0.0 3 6.90633967450421E-5 0.0 0.0 1.571330402743198 0.0 4 6.90633967450421E-5 0.0 0.0 2.028530089195377 0.0 5 6.90633967450421E-5 0.0 0.0 3.2907327281077667 0.0 6 6.90633967450421E-5 0.0 0.0 3.9335057616138736 0.0 7 6.90633967450421E-5 0.0 0.0 4.664956196540614 0.0 8 6.90633967450421E-5 0.0 0.0 5.756779435682986 0.0 9 6.90633967450421E-5 0.0 0.0 6.1811740086812685 0.0 10 6.90633967450421E-5 0.0 0.0 7.148614070285819 0.0 11 6.90633967450421E-5 0.0 0.0 8.433193249743603 0.0 12 1.381267934900842E-4 0.0 0.0 9.539036358425216 0.0 13 1.381267934900842E-4 0.0 0.0 9.962394980472325 0.0 14 1.381267934900842E-4 0.0 0.0 10.141890748612688 0.0 15 1.381267934900842E-4 0.0 0.0 10.448255976573696 0.0 16 1.381267934900842E-4 0.0 0.0 11.077216330730794 0.0 17 1.381267934900842E-4 0.0 0.0 11.836982758323003 0.0 18 1.381267934900842E-4 0.0 0.0 12.69316168777129 0.0 19 1.381267934900842E-4 0.0 0.0 13.26583537358118 0.0 20 1.381267934900842E-4 0.0 0.0 13.810745573899561 0.0 21 1.381267934900842E-4 0.0 0.0 14.461529961428093 0.0 22 2.0719019023512634E-4 0.0 0.0 15.131237719664766 0.0 23 2.0719019023512634E-4 0.0 0.0 15.774563260344834 0.0 24 2.762535869801684E-4 0.0 0.0 16.31470808628781 0.0 25 2.762535869801684E-4 0.0 0.0 16.777778161463317 0.0 26 2.762535869801684E-4 0.0 0.0 17.208526566962142 0.0 27 2.762535869801684E-4 0.0 0.0 17.62339039120961 0.0 28 2.762535869801684E-4 0.0 0.0 18.045851189099032 0.0 29 2.762535869801684E-4 0.0 0.0 18.47563270704343 0.0 30 2.762535869801684E-4 0.0 0.0 18.951962954393984 0.0 31 2.762535869801684E-4 0.0 0.0 19.410267655194087 0.0 32 2.762535869801684E-4 0.0 0.0 19.870575194499793 0.0 33 2.762535869801684E-4 0.0 0.0 20.304707706439125 0.0 34 2.762535869801684E-4 0.0 0.0 20.73759707723705 0.0 35 2.762535869801684E-4 0.0 0.0 21.17014113105125 0.0 36 2.762535869801684E-4 0.0 0.0 21.64439947649945 0.0 37 2.762535869801684E-4 0.0 0.0 22.105052332788883 0.0 38 2.762535869801684E-4 0.0 0.0 22.57482155744866 0.0 39 2.762535869801684E-4 0.0 0.0 23.043969211537732 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCCGCAC 20 7.0338935E-4 45.000004 36 TTAGCCG 20 7.0338935E-4 45.000004 1 TGACGTA 25 3.8913087E-5 45.000004 26 TGACGCG 25 3.8913087E-5 45.000004 13 ACTAACG 20 7.0338935E-4 45.000004 1 GTATACG 50 2.1827873E-11 45.000004 1 TCGGTAA 20 7.0338935E-4 45.000004 13 TAATCCG 20 7.0338935E-4 45.000004 43 ATTAGCG 35 1.2122291E-7 45.0 1 TGTAGCG 70 0.0 45.0 1 TTACGCG 30 2.1658943E-6 44.999996 1 CGTTTTT 36930 0.0 44.5065 1 TACGCGG 100 0.0 42.750004 2 GTAAGCG 50 1.0822987E-9 40.500004 1 GTCGAAG 45 1.9288564E-8 40.0 1 TATAGCG 45 1.9288564E-8 40.0 1 ATCGCAT 45 1.9288564E-8 40.0 10 GTTTTTT 41280 0.0 39.969116 2 GCTAGCG 80 0.0 39.375004 1 TATACGG 105 0.0 38.57143 2 >>END_MODULE