SRR2934869.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934869.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	474613
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15556	3.2776177643680215	No Hit
CCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC	3380	0.7121591696814036	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC	3194	0.6729693455510068	No Hit
CTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGCT	1928	0.40622570388927404	No Hit
TCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC	1415	0.29813764056188935	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCC	953	0.2007951741734845	No Hit
CGCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTG	944	0.1988988923607234	No Hit
ACTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC	913	0.19236725500565724	No Hit
GCCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTG	580	0.12220482793349528	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	566	0.11925505622475574	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTC	520	0.10956294918175441	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGGGC	35	1.209919E-7	45.000004	4
ACACGAC	30	2.1627984E-6	45.000004	26
CCGATAG	35	1.209919E-7	45.000004	11
GACACGA	30	2.1627984E-6	45.000004	25
TCGGGCA	30	2.1627984E-6	45.000004	5
GAACGTA	30	2.1627984E-6	45.000004	10
GCGATCG	35	1.209919E-7	45.000004	9
CGTGTTT	35	1.209919E-7	45.000004	1
TTAGTAG	30	2.1627984E-6	45.000004	1
TAGTGCG	35	1.209919E-7	45.000004	1
GTACGTT	30	2.1627984E-6	45.000004	14
CGGACGG	35	1.209919E-7	45.000004	2
GTGTTGA	20	7.029097E-4	45.0	9
GTTGACT	25	3.887334E-5	45.0	20
CTCACGG	25	3.887334E-5	45.0	32
TCGCAAA	20	7.029097E-4	45.0	13
GATAATA	40	6.8012014E-9	45.0	9
TACCAAT	25	3.887334E-5	45.0	12
ACGCAGA	20	7.029097E-4	45.0	14
CGGTTTA	20	7.029097E-4	45.0	22