SRR2934867.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934867.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1136208
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	47074	4.143079436159577	No Hit
CCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC	3798	0.33426978158928644	No Hit
GCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC	3414	0.3004731528030079	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCG	2014	0.17725627701970062	No Hit
CTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGCT	1987	0.1748799515581654	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGC	1979	0.17417585512511793	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTC	1891	0.16643079436159575	No Hit
CGCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTG	1487	0.13087392449269852	No Hit
TCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC	1270	0.1117753087462859	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	1164	0.10244603100840691	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGCTCG	30	2.1654796E-6	45.000004	1
TAGCCGT	30	2.1654796E-6	45.000004	44
CGCCTCG	30	2.1654796E-6	45.000004	24
ACTAACG	30	2.1654796E-6	45.000004	1
ACGTTGA	20	7.0332526E-4	45.0	10
TATATCG	20	7.0332526E-4	45.0	13
ATATACG	20	7.0332526E-4	45.0	1
CGTTTTT	31010	0.0	44.56466	1
TACGAAT	70	0.0	41.785713	12
GCTACGA	70	0.0	41.785713	10
CGAATAT	65	0.0	41.538464	14
CGGTCTA	55	6.184564E-11	40.90909	31
GTTTTTT	34505	0.0	40.226776	2
TCGTGTA	45	1.9283107E-8	40.0	17
CTAACGG	45	1.9283107E-8	40.0	2
CGGGCTA	45	1.9283107E-8	40.0	6
CGTAAGG	135	0.0	40.0	2
TATCACG	40	3.4581717E-7	39.375	1
TAGAACG	40	3.4581717E-7	39.375	1
TAGTGCG	75	0.0	39.0	1