SRR2934863.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934863.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2188378
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGC	20811	0.9509783044793907	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCG	17771	0.8120626326895993	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTC	17053	0.7792529444181947	No Hit
GCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGC	7121	0.32540082197865267	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCACATGTT	4283	0.19571573101173564	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4206	0.19219714327232315	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCT	3478	0.15893049555424155	No Hit
CCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGC	3295	0.15056813768005345	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCACATGTTCGTA	2777	0.1268976383421877	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTC	2673	0.12214526009674746	No Hit
GAACTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCT	2595	0.1185809764126673	No Hit
CTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGCT	2320	0.10601459162905129	Illumina Single End Adapter 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGTTC	20	7.0346874E-4	45.0	12
CCTATCG	20	7.0346874E-4	45.0	1
CGATCGA	185	0.0	42.567566	41
TACGGCT	2355	0.0	41.847134	7
ACGATCG	60	3.6379788E-12	41.250004	40
GTACGAG	180	0.0	40.0	1
CCGATCG	175	0.0	39.857143	40
TCTACGG	130	0.0	39.807693	2
CCGATGA	2310	0.0	39.545456	18
CGTAATG	40	3.4601362E-7	39.375	34
ACCCGTA	40	3.4601362E-7	39.375	31
CGATGAA	2380	0.0	38.94958	19
TGCGTAG	185	0.0	38.91892	1
ACCACCG	3230	0.0	38.86997	14
ACTCGAT	35	6.250879E-6	38.571426	13
CACGTTA	35	6.250879E-6	38.571426	31
CCACCGA	3020	0.0	38.145695	15
GGACGTA	130	0.0	38.076927	8
ACGGCTG	2600	0.0	38.076923	8
TGATACC	2255	0.0	38.01552	4