SRR2934861.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934861.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	872125
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGC	4731	0.5424681095026516	No Hit
CCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGC	4326	0.49602981224021786	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3269	0.3748315895083847	No Hit
CTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGCT	2727	0.31268453490038695	TruSeq Adapter, Index 21 (95% over 23bp)
TCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGC	1705	0.19549949835172709	No Hit
ACTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGC	1296	0.14860255123978786	TruSeq Adapter, Index 21 (95% over 22bp)
CGCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTG	1217	0.1395442167120539	TruSeq Adapter, Index 21 (95% over 21bp)
GCCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTG	875	0.1003296545793321	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACTT	20	7.032348E-4	45.000004	22
TGCCCGT	20	7.032348E-4	45.000004	26
ACACGGT	35	1.2114833E-7	45.000004	34
CGACGAT	20	7.032348E-4	45.000004	27
CTATCGA	20	7.032348E-4	45.000004	43
CGGCATA	20	7.032348E-4	45.000004	39
GCTATCG	20	7.032348E-4	45.000004	14
TAACGCC	20	7.032348E-4	45.000004	12
CGTTCCC	20	7.032348E-4	45.000004	31
TCGGCAC	20	7.032348E-4	45.000004	32
ATCGTGC	20	7.032348E-4	45.000004	34
GTGGACG	20	7.032348E-4	45.000004	1
CGTTAGC	20	7.032348E-4	45.000004	29
CTTATCG	45	3.8380676E-10	45.000004	12
TCCGTTC	20	7.032348E-4	45.000004	23
CTCGCGT	20	7.032348E-4	45.000004	25
TTAACGG	30	2.1648957E-6	45.000004	2
TCCGTAC	20	7.032348E-4	45.000004	32
CGTAACG	35	1.2114833E-7	45.000004	13
CCGCGAA	20	7.032348E-4	45.000004	34