##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934861.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 872125 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.24032105489465 33.0 31.0 34.0 30.0 34.0 2 32.41267249534184 34.0 31.0 34.0 30.0 34.0 3 32.40738426257704 34.0 31.0 34.0 30.0 34.0 4 35.95723090153361 37.0 35.0 37.0 35.0 37.0 5 35.85908671348717 37.0 35.0 37.0 35.0 37.0 6 35.78961387415795 37.0 35.0 37.0 35.0 37.0 7 36.12003325211409 37.0 35.0 37.0 35.0 37.0 8 35.97176322201519 37.0 35.0 37.0 35.0 37.0 9 37.66034226745019 39.0 38.0 39.0 35.0 39.0 10 37.37221499211696 39.0 37.0 39.0 34.0 39.0 11 37.228949978500786 39.0 37.0 39.0 34.0 39.0 12 37.130734699727675 39.0 37.0 39.0 34.0 39.0 13 37.03123405475132 39.0 37.0 39.0 33.0 39.0 14 38.19087630786871 40.0 37.0 41.0 33.0 41.0 15 38.26798910706607 40.0 37.0 41.0 34.0 41.0 16 38.370327647986244 40.0 37.0 41.0 34.0 41.0 17 38.37816712053891 40.0 37.0 41.0 34.0 41.0 18 38.34623706464097 40.0 37.0 41.0 34.0 41.0 19 38.320507954708326 40.0 37.0 41.0 34.0 41.0 20 38.243711623907124 40.0 37.0 41.0 34.0 41.0 21 38.18009918302995 40.0 37.0 41.0 34.0 41.0 22 38.11575290239358 40.0 36.0 41.0 34.0 41.0 23 37.973101332951124 40.0 36.0 41.0 34.0 41.0 24 37.69406335101046 40.0 36.0 41.0 33.0 41.0 25 37.63427031675505 39.0 36.0 41.0 33.0 41.0 26 37.78727475992547 40.0 36.0 41.0 34.0 41.0 27 37.825629353590365 40.0 36.0 41.0 34.0 41.0 28 37.8266922746166 40.0 36.0 41.0 34.0 41.0 29 37.83804500501648 40.0 36.0 41.0 34.0 41.0 30 37.69905346137308 40.0 36.0 41.0 33.0 41.0 31 37.58760728106636 40.0 36.0 41.0 33.0 41.0 32 37.40880263723663 40.0 35.0 41.0 33.0 41.0 33 37.294929052601404 39.0 35.0 41.0 33.0 41.0 34 37.27522430844203 40.0 35.0 41.0 33.0 41.0 35 37.07842912426544 39.0 35.0 41.0 32.0 41.0 36 37.01435344704028 39.0 35.0 41.0 31.0 41.0 37 36.954223305145476 39.0 35.0 41.0 31.0 41.0 38 36.86902909559983 39.0 35.0 41.0 31.0 41.0 39 36.96534671062061 39.0 35.0 41.0 32.0 41.0 40 36.867299985667195 39.0 35.0 41.0 31.0 41.0 41 36.69094223878458 39.0 35.0 41.0 31.0 41.0 42 36.606856815250104 39.0 35.0 41.0 31.0 41.0 43 36.60508872008026 39.0 35.0 41.0 31.0 41.0 44 36.58233739429554 39.0 35.0 41.0 31.0 41.0 45 36.548325068080835 39.0 35.0 41.0 31.0 41.0 46 36.454212412211554 39.0 35.0 41.0 31.0 41.0 47 36.30000859968468 39.0 35.0 41.0 30.0 41.0 48 36.232388705747454 39.0 35.0 41.0 30.0 41.0 49 36.23312483875591 39.0 35.0 40.0 30.0 41.0 50 36.14122631503511 39.0 35.0 40.0 30.0 41.0 51 35.19783402608571 38.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 7.0 10 9.0 11 11.0 12 11.0 13 10.0 14 16.0 15 24.0 16 42.0 17 91.0 18 203.0 19 326.0 20 646.0 21 1020.0 22 1491.0 23 2305.0 24 3262.0 25 4732.0 26 6679.0 27 8031.0 28 8904.0 29 10091.0 30 12294.0 31 15191.0 32 20295.0 33 28437.0 34 53297.0 35 74370.0 36 62977.0 37 99953.0 38 182482.0 39 274684.0 40 233.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.43958721513544 21.370560412784865 24.90491615307439 12.284936219005303 2 33.339486885480866 23.54742726100043 24.962706034112085 18.150379819406623 3 30.77104772824996 23.923176150207826 28.260054464669626 17.04572165687258 4 28.482155654292672 25.280550379819406 26.959094166547224 19.27819979934069 5 24.829697577755482 28.701963594668197 26.529339257560558 19.938999570015767 6 26.110018632650135 32.722832162820694 26.06300702307582 15.104142181453348 7 80.73051454779991 4.95295972481009 9.08470689408055 5.231818833309446 8 81.6354307008743 3.654636663322345 8.920280923032822 5.789651712770532 9 76.10078830442883 6.199684678228465 11.17752615737423 6.522000859968467 10 38.997620753905686 28.607367063207683 18.788132435144046 13.606879747742584 11 26.575777554822988 24.79552816396732 28.688662749032535 19.940031532177155 12 25.80329654579332 22.114490468682817 31.95402035258707 20.12819263293679 13 22.360326788017773 25.853518704314176 32.050566145907986 19.73558836176007 14 17.485681525010747 29.20934499068367 30.83491471979361 22.47005876451197 15 16.53432707467393 27.533323778128132 36.82774831589508 19.10460083130285 16 19.280951698437722 25.80203525870718 33.861659739142894 21.055353303712195 17 19.28519420954565 25.640246524294106 29.55126845349004 25.5232908126702 18 19.611294252544074 26.282700300988964 32.93725096746453 21.168754479002434 19 21.64460369786441 26.88341694137882 29.893191916296402 21.57878744446037 20 22.90256557259567 27.569786441163824 30.35344704027519 19.174200945965314 21 22.38291529310592 26.81897663752329 30.54504801490612 20.25306005446467 22 19.72882327647986 25.73461373082987 29.500358320194923 25.036204672495344 23 18.8529167263867 26.82918159667479 30.230643543070084 24.087258133868424 24 21.299240361186754 24.830958864841623 31.29207395728823 22.577726816683388 25 19.443772395012182 27.804041851798765 29.054550666475564 23.697635086713486 26 20.59567149204529 28.53776694854522 28.685108212698868 22.18145334671062 27 20.25810520280923 28.037838612584203 30.483932922459513 21.220123262147055 28 17.610319621613872 26.415020782571307 33.90993263580335 22.064726960011466 29 20.757689551383116 23.62780564712627 33.09823706464096 22.51626773684965 30 23.347685251540774 24.839558549519854 30.790655009316325 21.022101189623047 31 23.257445893650566 26.409631646839614 28.682356313601836 21.650566145907984 32 24.901246954278346 25.948000573312314 28.429296259137164 20.72145621327218 33 24.197448760212126 24.93335244374373 29.856614590798337 21.01258420524581 34 22.488175433567438 23.922832162820697 31.341722803497206 22.247269600114663 35 22.444259710477283 23.343901390282358 30.980421384549235 23.231417514691127 36 24.19664612297549 23.7276766518561 31.939687544790026 20.135989680378387 37 21.74034685394869 24.314060484448905 34.37248100902967 19.573111652572738 38 21.69310591944962 24.414619463952988 31.38850508814677 22.503769528450622 39 24.729023935789023 23.676193206249106 30.676909846638956 20.917873011322918 40 25.714547799914 22.66028378959438 30.938225598394727 20.68694281209689 41 21.00203525870718 23.331861831732837 31.872839329224593 23.79326358033539 42 22.24979217428694 22.3398022072524 32.83416941378816 22.576236204672494 43 23.173168983803926 23.205274473269313 31.99541350150494 21.626143041421813 44 22.198079403755195 24.62296115809087 29.53567435860685 23.643285079547084 45 23.45053748029239 24.02499641679805 27.51612440877168 25.008341694137883 46 24.54132148487889 24.043801060627775 29.992145621327214 21.422731833166118 47 21.051684104916152 24.22359180163394 33.43282212985524 21.29190196359467 48 21.33134585065214 22.01003296545793 33.15396302135588 23.50465816253404 49 22.448846208972338 21.246724953418376 34.136620323921456 22.16780851368783 50 21.98480722373513 20.91500644976351 33.207166403898526 23.893019922602836 51 21.039529883904258 21.56800917299699 29.448530887200803 27.943930055897955 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 300.0 1 515.5 2 731.0 3 3216.5 4 5702.0 5 3897.0 6 2092.0 7 2044.0 8 1996.0 9 2086.5 10 2177.0 11 2141.5 12 2106.0 13 2069.0 14 2032.0 15 1933.5 16 1835.0 17 2131.0 18 2427.0 19 2451.5 20 2476.0 21 2795.0 22 3114.0 23 3607.5 24 4101.0 25 4926.5 26 7297.5 27 8843.0 28 10405.0 29 11967.0 30 12661.0 31 13355.0 32 16346.0 33 19337.0 34 23164.0 35 26991.0 36 28094.5 37 29198.0 38 30791.5 39 32385.0 40 35946.0 41 39507.0 42 45206.0 43 50905.0 44 57964.0 45 65023.0 46 72835.0 47 80647.0 48 92081.0 49 103515.0 50 102012.0 51 100509.0 52 84378.5 53 68248.0 54 56671.5 55 45095.0 56 39779.0 57 34463.0 58 30405.0 59 26347.0 60 25254.5 61 24162.0 62 21239.0 63 18316.0 64 16078.0 65 13840.0 66 11321.0 67 8802.0 68 7124.5 69 5447.0 70 4467.0 71 3487.0 72 2944.5 73 2402.0 74 1769.5 75 909.0 76 681.0 77 491.5 78 302.0 79 304.5 80 307.0 81 172.0 82 37.0 83 28.5 84 20.0 85 12.5 86 5.0 87 4.5 88 4.0 89 2.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 872125.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.72594263341111 #Duplication Level Percentage of deduplicated Percentage of total 1 68.00526123484461 16.134889268280595 2 12.747236627360357 6.048804099105374 3 5.6128880979334745 3.995131830579768 4 3.0205241062784043 2.866591266735871 5 1.8488776832253135 2.1933182924198915 6 1.2035008635102031 1.7132515468142286 7 0.8614662924830396 1.4307369885248968 8 0.6005520185972102 1.139893019329332 9 0.44310653597543675 0.9461808227738455 >10 3.5630895970060172 19.471151072048055 >50 1.69315471026023 29.28780416719579 >100 0.3939953434734727 12.062627648839232 >500 0.002929333408724704 0.4773573840061695 >1k 0.0034175556435121547 2.2322625933469773 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGC 4731 0.5424681095026516 No Hit CCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGC 4326 0.49602981224021786 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3269 0.3748315895083847 No Hit CTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGCT 2727 0.31268453490038695 TruSeq Adapter, Index 21 (95% over 23bp) TCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGC 1705 0.19549949835172709 No Hit ACTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGC 1296 0.14860255123978786 TruSeq Adapter, Index 21 (95% over 22bp) CGCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTG 1217 0.1395442167120539 TruSeq Adapter, Index 21 (95% over 21bp) GCCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTG 875 0.1003296545793321 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.2932492475275906E-4 0.0 0.0 0.33424107782714635 0.0 2 2.2932492475275906E-4 0.0 0.0 1.8198079403755196 0.0 3 2.2932492475275906E-4 0.0 0.0 2.5553676365199944 0.0 4 2.2932492475275906E-4 0.0 0.0 3.3001003296545792 0.0 5 2.2932492475275906E-4 0.0 0.0 5.295571162390712 0.0 6 2.2932492475275906E-4 0.0 0.0 6.219291959294826 0.0 7 2.2932492475275906E-4 0.0 0.0 7.199197362763365 0.0 8 2.2932492475275906E-4 0.0 0.0 8.683846925612727 0.0 9 2.2932492475275906E-4 0.0 0.0 9.208771678371793 0.0 10 3.439873871291386E-4 0.0 0.0 10.469829439587215 0.0 11 3.439873871291386E-4 0.0 0.0 12.435029382255983 0.0 12 3.439873871291386E-4 0.0 0.0 13.902938225598394 0.0 13 3.439873871291386E-4 0.0 0.0 14.485652859395156 0.0 14 3.439873871291386E-4 0.0 0.0 14.728622617170704 0.0 15 3.439873871291386E-4 0.0 0.0 15.165945248674216 0.0 16 3.439873871291386E-4 0.0 0.0 16.096775118245663 0.0 17 3.439873871291386E-4 0.0 0.0 17.264382972624336 0.0 18 3.439873871291386E-4 0.0 0.0 18.503998853375375 0.0 19 3.439873871291386E-4 0.0 0.0 19.2145621327218 0.0 20 3.439873871291386E-4 0.0 0.0 19.9024222445177 0.0 21 3.439873871291386E-4 0.0 0.0 20.737394295542497 0.0 22 3.439873871291386E-4 0.0 0.0 21.664669628780278 0.0 23 3.439873871291386E-4 0.0 0.0 22.561674071950694 0.0 24 3.439873871291386E-4 0.0 0.0 23.24815823419808 0.0 25 3.439873871291386E-4 0.0 0.0 23.859538483588935 0.0 26 3.439873871291386E-4 0.0 0.0 24.36932779131432 0.0 27 3.439873871291386E-4 0.0 0.0 24.89344990683675 0.0 28 3.439873871291386E-4 0.0 0.0 25.426974344274043 0.0 29 3.439873871291386E-4 0.0 0.0 25.994094883187618 0.0 30 3.439873871291386E-4 0.0 0.0 26.6825283072954 0.0 31 3.439873871291386E-4 0.0 0.0 27.292876594524866 0.0 32 3.439873871291386E-4 0.0 0.0 27.840504514834457 0.0 33 3.439873871291386E-4 0.0 0.0 28.345363336677654 0.0 34 3.439873871291386E-4 0.0 0.0 28.89253260713774 0.0 35 3.439873871291386E-4 0.0 0.0 29.470316755052316 0.0 36 3.439873871291386E-4 0.0 0.0 30.019435287372797 0.0 37 3.439873871291386E-4 0.0 0.0 30.55605561129425 0.0 38 3.439873871291386E-4 0.0 0.0 31.074329941235487 0.0 39 0.0010319621613874158 0.0 0.0 31.60567579188763 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAACTT 20 7.032348E-4 45.000004 22 TGCCCGT 20 7.032348E-4 45.000004 26 ACACGGT 35 1.2114833E-7 45.000004 34 CGACGAT 20 7.032348E-4 45.000004 27 CTATCGA 20 7.032348E-4 45.000004 43 CGGCATA 20 7.032348E-4 45.000004 39 GCTATCG 20 7.032348E-4 45.000004 14 TAACGCC 20 7.032348E-4 45.000004 12 CGTTCCC 20 7.032348E-4 45.000004 31 TCGGCAC 20 7.032348E-4 45.000004 32 ATCGTGC 20 7.032348E-4 45.000004 34 GTGGACG 20 7.032348E-4 45.000004 1 CGTTAGC 20 7.032348E-4 45.000004 29 CTTATCG 45 3.8380676E-10 45.000004 12 TCCGTTC 20 7.032348E-4 45.000004 23 CTCGCGT 20 7.032348E-4 45.000004 25 TTAACGG 30 2.1648957E-6 45.000004 2 TCCGTAC 20 7.032348E-4 45.000004 32 CGTAACG 35 1.2114833E-7 45.000004 13 CCGCGAA 20 7.032348E-4 45.000004 34 >>END_MODULE